Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx1P18111 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx1P18111 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx1P18111 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx1P18111 Gm45605-201ENSMUST00000210265 4269 ntBASIC12.88□□□□□ -0.35
Cdx1P18111 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx1P18111 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx1P18111 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx1P18111 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx1P18111 Insr-201ENSMUST00000091291 9355 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx1P18111 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
Cdx1P18111 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx1P18111 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx1P18111 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
Cdx1P18111 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC12.87□□□□□ -0.35
Cdx1P18111 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx1P18111 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx1P18111 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx1P18111 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
Cdx1P18111 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx1P18111 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx1P18111 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC12.87□□□□□ -0.35
Cdx1P18111 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
Cdx1P18111 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx1P18111 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx1P18111 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx1P18111 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx1P18111 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx1P18111 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx1P18111 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx1P18111 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx1P18111 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx1P18111 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx1P18111 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx1P18111 Msl2-201ENSMUST00000085177 4889 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx1P18111 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx1P18111 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx1P18111 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx1P18111 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx1P18111 Btaf1-201ENSMUST00000099494 7204 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx1P18111 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC12.87□□□□□ -0.35
Cdx1P18111 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx1P18111 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx1P18111 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC12.87□□□□□ -0.35
Cdx1P18111 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
Cdx1P18111 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Cdx1P18111 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Cdx1P18111 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Cdx1P18111 Tmem143-203ENSMUST00000209350 2466 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Cdx1P18111 Gm43399-201ENSMUST00000202546 2374 ntBASIC12.86□□□□□ -0.35
Cdx1P18111 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Cdx1P18111 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Cdx1P18111 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Cdx1P18111 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Cdx1P18111 Gm29340-201ENSMUST00000188763 3854 ntBASIC12.86□□□□□ -0.35
Cdx1P18111 Tmpo-201ENSMUST00000020123 3772 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Cdx1P18111 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Cdx1P18111 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Cdx1P18111 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Cdx1P18111 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Cdx1P18111 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Cdx1P18111 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC12.86□□□□□ -0.35
Cdx1P18111 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC12.86□□□□□ -0.35
Cdx1P18111 Gm11539-201ENSMUST00000119837 557 ntBASIC12.86□□□□□ -0.35
Cdx1P18111 Gm13436-201ENSMUST00000120418 567 ntBASIC12.86□□□□□ -0.35
Cdx1P18111 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
Cdx1P18111 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC12.86□□□□□ -0.35
Cdx1P18111 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Cdx1P18111 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Cdx1P18111 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Cdx1P18111 Rassf5-203ENSMUST00000112442 3388 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Cdx1P18111 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Cdx1P18111 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Cdx1P18111 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Cdx1P18111 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
Cdx1P18111 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Cdx1P18111 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Cdx1P18111 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Cdx1P18111 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Cdx1P18111 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC12.86□□□□□ -0.35
Cdx1P18111 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Cdx1P18111 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Cdx1P18111 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Cdx1P18111 Plcb1-205ENSMUST00000131552 7202 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Cdx1P18111 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cdx1P18111 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cdx1P18111 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC12.85□□□□□ -0.35
Cdx1P18111 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cdx1P18111 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cdx1P18111 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cdx1P18111 Ints3-202ENSMUST00000071488 4038 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cdx1P18111 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cdx1P18111 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cdx1P18111 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC12.85□□□□□ -0.35
Cdx1P18111 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC12.85□□□□□ -0.35
Cdx1P18111 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Cdx1P18111 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC12.85□□□□□ -0.35
Cdx1P18111 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cdx1P18111 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
Cdx1P18111 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms