Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC25.14■■□□□ 1.62
Prpf40aQ9R1C7 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.62
Prpf40aQ9R1C7 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC25.14■■□□□ 1.61
Prpf40aQ9R1C7 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
Prpf40aQ9R1C7 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Prpf40aQ9R1C7 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Prpf40aQ9R1C7 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Prpf40aQ9R1C7 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC25.13■■□□□ 1.61
Prpf40aQ9R1C7 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Prpf40aQ9R1C7 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
Prpf40aQ9R1C7 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC25.11■■□□□ 1.61
Prpf40aQ9R1C7 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC25.11■■□□□ 1.61
Prpf40aQ9R1C7 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
Prpf40aQ9R1C7 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC25.1■■□□□ 1.61
Prpf40aQ9R1C7 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
Prpf40aQ9R1C7 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC25.1■■□□□ 1.61
Prpf40aQ9R1C7 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC25.1■■□□□ 1.61
Prpf40aQ9R1C7 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC25.09■■□□□ 1.61
Prpf40aQ9R1C7 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
Prpf40aQ9R1C7 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
Prpf40aQ9R1C7 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC25.08■■□□□ 1.61
Prpf40aQ9R1C7 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
Prpf40aQ9R1C7 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
Prpf40aQ9R1C7 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
Prpf40aQ9R1C7 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC25.07■■□□□ 1.6
Prpf40aQ9R1C7 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC25.07■■□□□ 1.6
Prpf40aQ9R1C7 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
Prpf40aQ9R1C7 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC25.06■■□□□ 1.6
Prpf40aQ9R1C7 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Prpf40aQ9R1C7 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
Prpf40aQ9R1C7 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC25.05■■□□□ 1.6
Prpf40aQ9R1C7 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
Prpf40aQ9R1C7 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
Prpf40aQ9R1C7 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC25.04■■□□□ 1.6
Prpf40aQ9R1C7 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC25.04■■□□□ 1.6
Prpf40aQ9R1C7 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC25.04■■□□□ 1.6
Prpf40aQ9R1C7 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Prpf40aQ9R1C7 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Prpf40aQ9R1C7 Gm14121-201ENSMUST00000121441 1380 ntBASIC25.04■■□□□ 1.6
Prpf40aQ9R1C7 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC25.03■■□□□ 1.6
Prpf40aQ9R1C7 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
Prpf40aQ9R1C7 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
Prpf40aQ9R1C7 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
Prpf40aQ9R1C7 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC25.01■■□□□ 1.59
Prpf40aQ9R1C7 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
Prpf40aQ9R1C7 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
Prpf40aQ9R1C7 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC25■■□□□ 1.59
Prpf40aQ9R1C7 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC24.98■■□□□ 1.59
Prpf40aQ9R1C7 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
Prpf40aQ9R1C7 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
Prpf40aQ9R1C7 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC24.97■■□□□ 1.59
Prpf40aQ9R1C7 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
Prpf40aQ9R1C7 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
Prpf40aQ9R1C7 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
Prpf40aQ9R1C7 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
Prpf40aQ9R1C7 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
Prpf40aQ9R1C7 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
Prpf40aQ9R1C7 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
Prpf40aQ9R1C7 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC24.94■■□□□ 1.58
Prpf40aQ9R1C7 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Prpf40aQ9R1C7 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC24.94■■□□□ 1.58
Prpf40aQ9R1C7 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC24.93■■□□□ 1.58
Prpf40aQ9R1C7 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
Prpf40aQ9R1C7 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC24.92■■□□□ 1.58
Prpf40aQ9R1C7 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC24.92■■□□□ 1.58
Prpf40aQ9R1C7 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
Prpf40aQ9R1C7 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
Prpf40aQ9R1C7 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
Prpf40aQ9R1C7 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
Prpf40aQ9R1C7 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC24.91■■□□□ 1.58
Prpf40aQ9R1C7 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC24.91■■□□□ 1.58
Prpf40aQ9R1C7 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC24.91■■□□□ 1.58
Prpf40aQ9R1C7 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC24.91■■□□□ 1.58
Prpf40aQ9R1C7 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
Prpf40aQ9R1C7 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC24.91■■□□□ 1.58
Prpf40aQ9R1C7 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
Prpf40aQ9R1C7 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
Prpf40aQ9R1C7 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
Prpf40aQ9R1C7 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC24.89■■□□□ 1.58
Prpf40aQ9R1C7 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
Prpf40aQ9R1C7 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC24.89■■□□□ 1.58
Prpf40aQ9R1C7 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
Prpf40aQ9R1C7 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC24.88■■□□□ 1.57
Prpf40aQ9R1C7 Gm4799-201ENSMUST00000095396 657 ntBASIC24.88■■□□□ 1.57
Prpf40aQ9R1C7 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC24.88■■□□□ 1.57
Prpf40aQ9R1C7 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
Prpf40aQ9R1C7 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
Prpf40aQ9R1C7 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
Prpf40aQ9R1C7 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC24.87■■□□□ 1.57
Prpf40aQ9R1C7 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
Prpf40aQ9R1C7 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
Prpf40aQ9R1C7 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
Prpf40aQ9R1C7 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
Prpf40aQ9R1C7 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
Prpf40aQ9R1C7 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC24.86■■□□□ 1.57
Prpf40aQ9R1C7 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
Prpf40aQ9R1C7 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
Prpf40aQ9R1C7 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC24.85■■□□□ 1.57
Prpf40aQ9R1C7 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC24.85■■□□□ 1.57
Prpf40aQ9R1C7 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
Retrieved 100 of 76,532 protein–RNA pairs in 33.1 ms