Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC25.77■■□□□ 1.72
Ushbp1Q8R370 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
Ushbp1Q8R370 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
Ushbp1Q8R370 Gm14121-201ENSMUST00000121441 1380 ntBASIC25.76■■□□□ 1.71
Ushbp1Q8R370 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC25.76■■□□□ 1.71
Ushbp1Q8R370 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC25.76■■□□□ 1.71
Ushbp1Q8R370 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
Ushbp1Q8R370 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
Ushbp1Q8R370 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC25.75■■□□□ 1.71
Ushbp1Q8R370 AC167019.3-201ENSMUST00000228225 1266 ntBASIC25.75■■□□□ 1.71
Ushbp1Q8R370 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC25.75■■□□□ 1.71
Ushbp1Q8R370 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
Ushbp1Q8R370 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC25.74■■□□□ 1.71
Ushbp1Q8R370 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC25.74■■□□□ 1.71
Ushbp1Q8R370 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC25.73■■□□□ 1.71
Ushbp1Q8R370 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
Ushbp1Q8R370 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC25.73■■□□□ 1.71
Ushbp1Q8R370 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Ushbp1Q8R370 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC25.72■■□□□ 1.71
Ushbp1Q8R370 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC25.71■■□□□ 1.71
Ushbp1Q8R370 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC25.71■■□□□ 1.71
Ushbp1Q8R370 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC25.7■■□□□ 1.71
Ushbp1Q8R370 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC25.7■■□□□ 1.7
Ushbp1Q8R370 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
Ushbp1Q8R370 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
Ushbp1Q8R370 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Ushbp1Q8R370 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
Ushbp1Q8R370 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC25.69■■□□□ 1.7
Ushbp1Q8R370 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC25.69■■□□□ 1.7
Ushbp1Q8R370 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC25.69■■□□□ 1.7
Ushbp1Q8R370 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC25.69■■□□□ 1.7
Ushbp1Q8R370 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
Ushbp1Q8R370 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
Ushbp1Q8R370 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Ushbp1Q8R370 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
Ushbp1Q8R370 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC25.68■■□□□ 1.7
Ushbp1Q8R370 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Ushbp1Q8R370 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Ushbp1Q8R370 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC25.66■■□□□ 1.7
Ushbp1Q8R370 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Ushbp1Q8R370 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Ushbp1Q8R370 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC25.65■■□□□ 1.7
Ushbp1Q8R370 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Ushbp1Q8R370 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
Ushbp1Q8R370 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
Ushbp1Q8R370 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC25.64■■□□□ 1.7
Ushbp1Q8R370 Gm37136-201ENSMUST00000194368 194 ntBASIC25.63■■□□□ 1.69
Ushbp1Q8R370 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC25.63■■□□□ 1.69
Ushbp1Q8R370 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
Ushbp1Q8R370 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC25.61■■□□□ 1.69
Ushbp1Q8R370 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC25.61■■□□□ 1.69
Ushbp1Q8R370 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Ushbp1Q8R370 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Ushbp1Q8R370 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Ushbp1Q8R370 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC25.6■■□□□ 1.69
Ushbp1Q8R370 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
Ushbp1Q8R370 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Ushbp1Q8R370 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC25.59■■□□□ 1.69
Ushbp1Q8R370 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
Ushbp1Q8R370 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
Ushbp1Q8R370 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC25.59■■□□□ 1.69
Ushbp1Q8R370 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
Ushbp1Q8R370 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
Ushbp1Q8R370 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC25.59■■□□□ 1.69
Ushbp1Q8R370 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
Ushbp1Q8R370 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
Ushbp1Q8R370 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC25.58■■□□□ 1.69
Ushbp1Q8R370 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.68
Ushbp1Q8R370 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC25.57■■□□□ 1.68
Ushbp1Q8R370 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
Ushbp1Q8R370 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
Ushbp1Q8R370 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC25.56■■□□□ 1.68
Ushbp1Q8R370 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC25.56■■□□□ 1.68
Ushbp1Q8R370 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Ushbp1Q8R370 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
Ushbp1Q8R370 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
Ushbp1Q8R370 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC25.55■■□□□ 1.68
Ushbp1Q8R370 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC25.54■■□□□ 1.68
Ushbp1Q8R370 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
Ushbp1Q8R370 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC25.53■■□□□ 1.68
Ushbp1Q8R370 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
Ushbp1Q8R370 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC25.53■■□□□ 1.68
Ushbp1Q8R370 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
Ushbp1Q8R370 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
Ushbp1Q8R370 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC25.52■■□□□ 1.68
Ushbp1Q8R370 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
Ushbp1Q8R370 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Ushbp1Q8R370 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Ushbp1Q8R370 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Ushbp1Q8R370 Gm4419-202ENSMUST00000226239 1431 ntBASIC25.51■■□□□ 1.67
Ushbp1Q8R370 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
Ushbp1Q8R370 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC25.5■■□□□ 1.67
Ushbp1Q8R370 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC25.5■■□□□ 1.67
Ushbp1Q8R370 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC25.5■■□□□ 1.67
Ushbp1Q8R370 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
Ushbp1Q8R370 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
Ushbp1Q8R370 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC25.48■■□□□ 1.67
Ushbp1Q8R370 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
Ushbp1Q8R370 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Ushbp1Q8R370 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Retrieved 100 of 76,532 protein–RNA pairs in 41.8 ms