Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
Smarca1Q6PGB8 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC25.66■■□□□ 1.7
Smarca1Q6PGB8 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC25.65■■□□□ 1.7
Smarca1Q6PGB8 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
Smarca1Q6PGB8 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC25.64■■□□□ 1.7
Smarca1Q6PGB8 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
Smarca1Q6PGB8 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC25.62■■□□□ 1.69
Smarca1Q6PGB8 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
Smarca1Q6PGB8 AC167019.3-201ENSMUST00000228225 1266 ntBASIC25.62■■□□□ 1.69
Smarca1Q6PGB8 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC25.62■■□□□ 1.69
Smarca1Q6PGB8 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Smarca1Q6PGB8 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Smarca1Q6PGB8 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
Smarca1Q6PGB8 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC25.61■■□□□ 1.69
Smarca1Q6PGB8 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Smarca1Q6PGB8 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Smarca1Q6PGB8 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
Smarca1Q6PGB8 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC25.6■■□□□ 1.69
Smarca1Q6PGB8 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC25.6■■□□□ 1.69
Smarca1Q6PGB8 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC25.59■■□□□ 1.69
Smarca1Q6PGB8 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
Smarca1Q6PGB8 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
Smarca1Q6PGB8 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC25.57■■□□□ 1.68
Smarca1Q6PGB8 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Smarca1Q6PGB8 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Smarca1Q6PGB8 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC25.56■■□□□ 1.68
Smarca1Q6PGB8 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC25.56■■□□□ 1.68
Smarca1Q6PGB8 Gm37136-201ENSMUST00000194368 194 ntBASIC25.56■■□□□ 1.68
Smarca1Q6PGB8 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC25.55■■□□□ 1.68
Smarca1Q6PGB8 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
Smarca1Q6PGB8 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC25.54■■□□□ 1.68
Smarca1Q6PGB8 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
Smarca1Q6PGB8 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
Smarca1Q6PGB8 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
Smarca1Q6PGB8 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC25.53■■□□□ 1.68
Smarca1Q6PGB8 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC25.52■■□□□ 1.68
Smarca1Q6PGB8 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
Smarca1Q6PGB8 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
Smarca1Q6PGB8 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
Smarca1Q6PGB8 Gm6311-201ENSMUST00000073790 878 ntBASIC25.51■■□□□ 1.67
Smarca1Q6PGB8 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
Smarca1Q6PGB8 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Smarca1Q6PGB8 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Smarca1Q6PGB8 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC25.5■■□□□ 1.67
Smarca1Q6PGB8 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC25.5■■□□□ 1.67
Smarca1Q6PGB8 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC25.5■■□□□ 1.67
Smarca1Q6PGB8 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC25.49■■□□□ 1.67
Smarca1Q6PGB8 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC25.49■■□□□ 1.67
Smarca1Q6PGB8 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
Smarca1Q6PGB8 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
Smarca1Q6PGB8 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
Smarca1Q6PGB8 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC25.48■■□□□ 1.67
Smarca1Q6PGB8 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC25.48■■□□□ 1.67
Smarca1Q6PGB8 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC25.48■■□□□ 1.67
Smarca1Q6PGB8 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC25.48■■□□□ 1.67
Smarca1Q6PGB8 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC25.47■■□□□ 1.67
Smarca1Q6PGB8 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
Smarca1Q6PGB8 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
Smarca1Q6PGB8 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Smarca1Q6PGB8 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
Smarca1Q6PGB8 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC25.46■■□□□ 1.67
Smarca1Q6PGB8 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC25.46■■□□□ 1.67
Smarca1Q6PGB8 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC25.46■■□□□ 1.67
Smarca1Q6PGB8 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC25.46■■□□□ 1.67
Smarca1Q6PGB8 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC25.46■■□□□ 1.67
Smarca1Q6PGB8 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC25.45■■□□□ 1.66
Smarca1Q6PGB8 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
Smarca1Q6PGB8 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
Smarca1Q6PGB8 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
Smarca1Q6PGB8 Gm4799-201ENSMUST00000095396 657 ntBASIC25.44■■□□□ 1.66
Smarca1Q6PGB8 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC25.44■■□□□ 1.66
Smarca1Q6PGB8 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC25.44■■□□□ 1.66
Smarca1Q6PGB8 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
Smarca1Q6PGB8 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC25.42■■□□□ 1.66
Smarca1Q6PGB8 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
Smarca1Q6PGB8 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC25.42■■□□□ 1.66
Smarca1Q6PGB8 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
Smarca1Q6PGB8 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
Smarca1Q6PGB8 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
Smarca1Q6PGB8 Mir6538-201ENSMUST00000183713 110 ntBASIC25.41■■□□□ 1.66
Smarca1Q6PGB8 AC154454.1-201ENSMUST00000225253 216 ntBASIC25.41■■□□□ 1.66
Smarca1Q6PGB8 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
Smarca1Q6PGB8 Gm14121-201ENSMUST00000121441 1380 ntBASIC25.41■■□□□ 1.66
Smarca1Q6PGB8 Il17rd-202ENSMUST00000223942 2186 ntBASIC25.41■■□□□ 1.66
Smarca1Q6PGB8 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
Smarca1Q6PGB8 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC25.4■■□□□ 1.66
Smarca1Q6PGB8 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC25.4■■□□□ 1.66
Smarca1Q6PGB8 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
Smarca1Q6PGB8 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
Smarca1Q6PGB8 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC25.39■■□□□ 1.65
Smarca1Q6PGB8 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC25.38■■□□□ 1.65
Smarca1Q6PGB8 Gm11175-201ENSMUST00000116172 543 ntBASIC25.38■■□□□ 1.65
Smarca1Q6PGB8 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC25.37■■□□□ 1.65
Smarca1Q6PGB8 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC25.37■■□□□ 1.65
Smarca1Q6PGB8 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
Smarca1Q6PGB8 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
Smarca1Q6PGB8 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC25.36■■□□□ 1.65
Smarca1Q6PGB8 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
Smarca1Q6PGB8 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
Smarca1Q6PGB8 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
Retrieved 100 of 76,532 protein–RNA pairs in 12.5 ms