Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC21.31■■□□□ 1
Usf1Q61069 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Usf1Q61069 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Usf1Q61069 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Usf1Q61069 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Usf1Q61069 Terc-201ENSMUST00000082862 423 ntBASIC21.3■■□□□ 1
Usf1Q61069 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC21.29■■□□□ 1
Usf1Q61069 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC21.29■■□□□ 1
Usf1Q61069 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC21.29■■□□□ 1
Usf1Q61069 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Usf1Q61069 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC21.28■■□□□ 1
Usf1Q61069 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Usf1Q61069 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
Usf1Q61069 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Usf1Q61069 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Usf1Q61069 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC21.27■■□□□ 1
Usf1Q61069 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
Usf1Q61069 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Usf1Q61069 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
Usf1Q61069 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Usf1Q61069 Gm5522-201ENSMUST00000189483 1242 ntBASIC21.24■□□□□ 0.99
Usf1Q61069 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Usf1Q61069 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
Usf1Q61069 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Usf1Q61069 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Usf1Q61069 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Usf1Q61069 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Usf1Q61069 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Usf1Q61069 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Usf1Q61069 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Usf1Q61069 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Usf1Q61069 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC21.22■□□□□ 0.99
Usf1Q61069 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Usf1Q61069 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
Usf1Q61069 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC21.21■□□□□ 0.99
Usf1Q61069 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Usf1Q61069 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC21.2■□□□□ 0.98
Usf1Q61069 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC21.2■□□□□ 0.98
Usf1Q61069 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Usf1Q61069 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Usf1Q61069 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Usf1Q61069 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC21.19■□□□□ 0.98
Usf1Q61069 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
Usf1Q61069 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usf1Q61069 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
Usf1Q61069 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC21.18■□□□□ 0.98
Usf1Q61069 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
Usf1Q61069 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usf1Q61069 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Usf1Q61069 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Usf1Q61069 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Usf1Q61069 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC21.16■□□□□ 0.98
Usf1Q61069 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC21.16■□□□□ 0.98
Usf1Q61069 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Usf1Q61069 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Usf1Q61069 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usf1Q61069 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usf1Q61069 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usf1Q61069 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC21.15■□□□□ 0.98
Usf1Q61069 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Usf1Q61069 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Usf1Q61069 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Usf1Q61069 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Usf1Q61069 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC21.13■□□□□ 0.97
Usf1Q61069 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Usf1Q61069 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC21.13■□□□□ 0.97
Usf1Q61069 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Usf1Q61069 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
Usf1Q61069 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC21.13■□□□□ 0.97
Usf1Q61069 AC093043.1-201ENSMUST00000226700 898 ntBASIC21.13■□□□□ 0.97
Usf1Q61069 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Usf1Q61069 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Usf1Q61069 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Usf1Q61069 Gm44428-201ENSMUST00000204474 874 ntBASIC21.12■□□□□ 0.97
Usf1Q61069 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usf1Q61069 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usf1Q61069 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usf1Q61069 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Usf1Q61069 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
Usf1Q61069 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC21.11■□□□□ 0.97
Usf1Q61069 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Usf1Q61069 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Usf1Q61069 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC21.1■□□□□ 0.97
Usf1Q61069 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Usf1Q61069 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC21.09■□□□□ 0.97
Usf1Q61069 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
Usf1Q61069 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Usf1Q61069 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Usf1Q61069 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Usf1Q61069 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC21.08■□□□□ 0.97
Usf1Q61069 Gm15820-201ENSMUST00000201566 728 ntBASIC21.08■□□□□ 0.97
Usf1Q61069 Rps24-207ENSMUST00000224568 714 ntBASIC21.08■□□□□ 0.97
Usf1Q61069 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Usf1Q61069 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Usf1Q61069 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Usf1Q61069 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Usf1Q61069 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Usf1Q61069 Gm14121-201ENSMUST00000121441 1380 ntBASIC21.07■□□□□ 0.96
Usf1Q61069 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC21.07■□□□□ 0.96
Usf1Q61069 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 73.8 ms