Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC21.31■■□□□ 1
Usf1Q61069 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Usf1Q61069 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Usf1Q61069 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Usf1Q61069 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Usf1Q61069 Terc-201ENSMUST00000082862 423 ntBASIC21.3■■□□□ 1
Usf1Q61069 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC21.29■■□□□ 1
Usf1Q61069 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC21.29■■□□□ 1
Usf1Q61069 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC21.29■■□□□ 1
Usf1Q61069 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Usf1Q61069 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC21.28■■□□□ 1
Usf1Q61069 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Usf1Q61069 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
Usf1Q61069 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Usf1Q61069 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Usf1Q61069 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC21.27■■□□□ 1
Usf1Q61069 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
Usf1Q61069 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Usf1Q61069 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
Usf1Q61069 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Usf1Q61069 Gm5522-201ENSMUST00000189483 1242 ntBASIC21.24■□□□□ 0.99
Usf1Q61069 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Usf1Q61069 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
Usf1Q61069 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Usf1Q61069 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Usf1Q61069 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Usf1Q61069 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Usf1Q61069 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Usf1Q61069 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Usf1Q61069 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Usf1Q61069 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Usf1Q61069 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC21.22■□□□□ 0.99
Usf1Q61069 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Usf1Q61069 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
Usf1Q61069 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC21.21■□□□□ 0.99
Usf1Q61069 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Usf1Q61069 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC21.2■□□□□ 0.98
Usf1Q61069 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC21.2■□□□□ 0.98
Usf1Q61069 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Usf1Q61069 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Usf1Q61069 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Usf1Q61069 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC21.19■□□□□ 0.98
Usf1Q61069 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
Usf1Q61069 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usf1Q61069 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
Usf1Q61069 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC21.18■□□□□ 0.98
Usf1Q61069 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
Usf1Q61069 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usf1Q61069 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Usf1Q61069 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Usf1Q61069 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Usf1Q61069 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC21.16■□□□□ 0.98
Usf1Q61069 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC21.16■□□□□ 0.98
Usf1Q61069 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Usf1Q61069 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Usf1Q61069 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usf1Q61069 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usf1Q61069 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usf1Q61069 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC21.15■□□□□ 0.98
Usf1Q61069 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Usf1Q61069 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Usf1Q61069 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Usf1Q61069 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Usf1Q61069 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC21.13■□□□□ 0.97
Usf1Q61069 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Usf1Q61069 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC21.13■□□□□ 0.97
Usf1Q61069 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Usf1Q61069 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
Usf1Q61069 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC21.13■□□□□ 0.97
Usf1Q61069 AC093043.1-201ENSMUST00000226700 898 ntBASIC21.13■□□□□ 0.97
Usf1Q61069 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Usf1Q61069 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Usf1Q61069 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Usf1Q61069 Gm44428-201ENSMUST00000204474 874 ntBASIC21.12■□□□□ 0.97
Usf1Q61069 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usf1Q61069 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usf1Q61069 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usf1Q61069 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Usf1Q61069 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
Usf1Q61069 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC21.11■□□□□ 0.97
Usf1Q61069 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Usf1Q61069 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Usf1Q61069 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC21.1■□□□□ 0.97
Usf1Q61069 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Usf1Q61069 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC21.09■□□□□ 0.97
Usf1Q61069 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
Usf1Q61069 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Usf1Q61069 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Usf1Q61069 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Usf1Q61069 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC21.08■□□□□ 0.97
Usf1Q61069 Gm15820-201ENSMUST00000201566 728 ntBASIC21.08■□□□□ 0.97
Usf1Q61069 Rps24-207ENSMUST00000224568 714 ntBASIC21.08■□□□□ 0.97
Usf1Q61069 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Usf1Q61069 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Usf1Q61069 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Usf1Q61069 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Usf1Q61069 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Usf1Q61069 Gm14121-201ENSMUST00000121441 1380 ntBASIC21.07■□□□□ 0.96
Usf1Q61069 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC21.07■□□□□ 0.96
Usf1Q61069 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 14.2 ms