Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC23.35■■□□□ 1.33
Col27a1Q5QNQ9 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC23.34■■□□□ 1.33
Col27a1Q5QNQ9 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Col27a1Q5QNQ9 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC23.34■■□□□ 1.33
Col27a1Q5QNQ9 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC23.34■■□□□ 1.33
Col27a1Q5QNQ9 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Col27a1Q5QNQ9 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Col27a1Q5QNQ9 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Col27a1Q5QNQ9 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC23.32■■□□□ 1.32
Col27a1Q5QNQ9 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Col27a1Q5QNQ9 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Col27a1Q5QNQ9 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Col27a1Q5QNQ9 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
Col27a1Q5QNQ9 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC23.31■■□□□ 1.32
Col27a1Q5QNQ9 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC23.31■■□□□ 1.32
Col27a1Q5QNQ9 Rps24-207ENSMUST00000224568 714 ntBASIC23.3■■□□□ 1.32
Col27a1Q5QNQ9 Terc-201ENSMUST00000082862 423 ntBASIC23.3■■□□□ 1.32
Col27a1Q5QNQ9 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Col27a1Q5QNQ9 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC23.29■■□□□ 1.32
Col27a1Q5QNQ9 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC23.29■■□□□ 1.32
Col27a1Q5QNQ9 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Col27a1Q5QNQ9 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Col27a1Q5QNQ9 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
Col27a1Q5QNQ9 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Col27a1Q5QNQ9 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC23.27■■□□□ 1.32
Col27a1Q5QNQ9 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC23.27■■□□□ 1.32
Col27a1Q5QNQ9 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Col27a1Q5QNQ9 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC23.27■■□□□ 1.32
Col27a1Q5QNQ9 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Col27a1Q5QNQ9 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC23.26■■□□□ 1.31
Col27a1Q5QNQ9 AC153911.1-201ENSMUST00000220378 758 ntBASIC23.26■■□□□ 1.31
Col27a1Q5QNQ9 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Col27a1Q5QNQ9 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
Col27a1Q5QNQ9 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
Col27a1Q5QNQ9 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Col27a1Q5QNQ9 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
Col27a1Q5QNQ9 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
Col27a1Q5QNQ9 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Col27a1Q5QNQ9 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC23.24■■□□□ 1.31
Col27a1Q5QNQ9 Gm13238-201ENSMUST00000117655 780 ntBASIC23.24■■□□□ 1.31
Col27a1Q5QNQ9 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Col27a1Q5QNQ9 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Col27a1Q5QNQ9 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC23.22■■□□□ 1.31
Col27a1Q5QNQ9 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC23.22■■□□□ 1.31
Col27a1Q5QNQ9 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Col27a1Q5QNQ9 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC23.22■■□□□ 1.31
Col27a1Q5QNQ9 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC23.21■■□□□ 1.31
Col27a1Q5QNQ9 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
Col27a1Q5QNQ9 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Col27a1Q5QNQ9 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC23.19■■□□□ 1.3
Col27a1Q5QNQ9 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
Col27a1Q5QNQ9 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC23.19■■□□□ 1.3
Col27a1Q5QNQ9 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
Col27a1Q5QNQ9 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
Col27a1Q5QNQ9 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC23.18■■□□□ 1.3
Col27a1Q5QNQ9 Gm45444-201ENSMUST00000211394 898 ntBASIC23.18■■□□□ 1.3
Col27a1Q5QNQ9 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
Col27a1Q5QNQ9 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
Col27a1Q5QNQ9 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Col27a1Q5QNQ9 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC23.16■■□□□ 1.3
Col27a1Q5QNQ9 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Col27a1Q5QNQ9 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC23.15■■□□□ 1.3
Col27a1Q5QNQ9 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Col27a1Q5QNQ9 Gm45102-201ENSMUST00000207427 857 ntBASIC23.15■■□□□ 1.3
Col27a1Q5QNQ9 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC23.13■■□□□ 1.29
Col27a1Q5QNQ9 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Col27a1Q5QNQ9 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Col27a1Q5QNQ9 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC23.12■■□□□ 1.29
Col27a1Q5QNQ9 Gm43592-201ENSMUST00000196922 1165 ntBASIC23.12■■□□□ 1.29
Col27a1Q5QNQ9 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Col27a1Q5QNQ9 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC23.11■■□□□ 1.29
Col27a1Q5QNQ9 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
Col27a1Q5QNQ9 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC23.11■■□□□ 1.29
Col27a1Q5QNQ9 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Col27a1Q5QNQ9 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Col27a1Q5QNQ9 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC23.1■■□□□ 1.29
Col27a1Q5QNQ9 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
Col27a1Q5QNQ9 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Col27a1Q5QNQ9 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC23.1■■□□□ 1.29
Col27a1Q5QNQ9 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC23.1■■□□□ 1.29
Col27a1Q5QNQ9 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Col27a1Q5QNQ9 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Col27a1Q5QNQ9 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Col27a1Q5QNQ9 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
Col27a1Q5QNQ9 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
Col27a1Q5QNQ9 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC23.09■■□□□ 1.29
Col27a1Q5QNQ9 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Col27a1Q5QNQ9 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
Col27a1Q5QNQ9 Gm44428-201ENSMUST00000204474 874 ntBASIC23.08■■□□□ 1.29
Col27a1Q5QNQ9 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
Col27a1Q5QNQ9 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
Col27a1Q5QNQ9 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Col27a1Q5QNQ9 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Col27a1Q5QNQ9 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Col27a1Q5QNQ9 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
Col27a1Q5QNQ9 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC23.07■■□□□ 1.28
Col27a1Q5QNQ9 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC23.06■■□□□ 1.28
Col27a1Q5QNQ9 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
Col27a1Q5QNQ9 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC23.06■■□□□ 1.28
Col27a1Q5QNQ9 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
Retrieved 100 of 76,532 protein–RNA pairs in 51.6 ms