Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Col8a1Q00780 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col8a1Q00780 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col8a1Q00780 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Col8a1Q00780 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
Col8a1Q00780 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col8a1Q00780 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col8a1Q00780 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col8a1Q00780 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC19.67■□□□□ 0.74
Col8a1Q00780 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Col8a1Q00780 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col8a1Q00780 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Col8a1Q00780 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col8a1Q00780 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col8a1Q00780 AC122317.2-201ENSMUST00000218708 1248 ntBASIC19.66■□□□□ 0.74
Col8a1Q00780 Gm9812-201ENSMUST00000061934 968 ntBASIC19.66■□□□□ 0.74
Col8a1Q00780 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col8a1Q00780 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Col8a1Q00780 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col8a1Q00780 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col8a1Q00780 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
Col8a1Q00780 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Col8a1Q00780 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC19.65■□□□□ 0.74
Col8a1Q00780 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col8a1Q00780 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col8a1Q00780 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col8a1Q00780 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Col8a1Q00780 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC19.64■□□□□ 0.73
Col8a1Q00780 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Col8a1Q00780 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Col8a1Q00780 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Col8a1Q00780 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Col8a1Q00780 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC19.63■□□□□ 0.73
Col8a1Q00780 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Col8a1Q00780 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Col8a1Q00780 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Col8a1Q00780 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Col8a1Q00780 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Col8a1Q00780 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
Col8a1Q00780 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
Col8a1Q00780 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Col8a1Q00780 Gm14117-201ENSMUST00000122417 843 ntBASIC19.62■□□□□ 0.73
Col8a1Q00780 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Col8a1Q00780 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Col8a1Q00780 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col8a1Q00780 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC19.61■□□□□ 0.73
Col8a1Q00780 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Col8a1Q00780 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC19.61■□□□□ 0.73
Col8a1Q00780 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col8a1Q00780 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Col8a1Q00780 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC19.6■□□□□ 0.73
Col8a1Q00780 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC19.6■□□□□ 0.73
Col8a1Q00780 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
Col8a1Q00780 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col8a1Q00780 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Col8a1Q00780 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Col8a1Q00780 Gm13238-201ENSMUST00000117655 780 ntBASIC19.59■□□□□ 0.73
Col8a1Q00780 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Col8a1Q00780 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Col8a1Q00780 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Col8a1Q00780 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Col8a1Q00780 Gm45102-201ENSMUST00000207427 857 ntBASIC19.58■□□□□ 0.72
Col8a1Q00780 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Col8a1Q00780 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
Col8a1Q00780 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Col8a1Q00780 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Col8a1Q00780 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Col8a1Q00780 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC19.55■□□□□ 0.72
Col8a1Q00780 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC19.55■□□□□ 0.72
Col8a1Q00780 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
Col8a1Q00780 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Col8a1Q00780 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC19.54■□□□□ 0.72
Col8a1Q00780 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Col8a1Q00780 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC19.54■□□□□ 0.72
Col8a1Q00780 Zxda-201ENSMUST00000117281 2621 ntBASIC19.54■□□□□ 0.72
Col8a1Q00780 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Col8a1Q00780 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC19.54■□□□□ 0.72
Col8a1Q00780 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
Col8a1Q00780 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Col8a1Q00780 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC19.54■□□□□ 0.72
Col8a1Q00780 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Col8a1Q00780 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC19.54■□□□□ 0.72
Col8a1Q00780 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Col8a1Q00780 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Col8a1Q00780 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
Col8a1Q00780 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Col8a1Q00780 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Col8a1Q00780 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC19.52■□□□□ 0.72
Col8a1Q00780 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
Col8a1Q00780 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC19.51■□□□□ 0.71
Col8a1Q00780 AC153911.1-201ENSMUST00000220378 758 ntBASIC19.51■□□□□ 0.71
Col8a1Q00780 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Col8a1Q00780 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC19.5■□□□□ 0.71
Col8a1Q00780 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Col8a1Q00780 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Col8a1Q00780 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC19.49■□□□□ 0.71
Col8a1Q00780 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col8a1Q00780 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col8a1Q00780 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col8a1Q00780 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 13.3 ms