Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Gm12818-201ENSMUST00000117562 1349 ntBASIC24.46■■□□□ 1.51
Shmt1P50431 Mir6538-201ENSMUST00000183713 110 ntBASIC24.46■■□□□ 1.51
Shmt1P50431 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
Shmt1P50431 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC24.46■■□□□ 1.51
Shmt1P50431 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
Shmt1P50431 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC24.45■■□□□ 1.51
Shmt1P50431 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Shmt1P50431 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
Shmt1P50431 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Shmt1P50431 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC24.45■■□□□ 1.5
Shmt1P50431 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Shmt1P50431 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
Shmt1P50431 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC24.44■■□□□ 1.5
Shmt1P50431 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC24.44■■□□□ 1.5
Shmt1P50431 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Shmt1P50431 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC24.43■■□□□ 1.5
Shmt1P50431 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Shmt1P50431 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC24.43■■□□□ 1.5
Shmt1P50431 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
Shmt1P50431 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Shmt1P50431 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Shmt1P50431 AC153890.1-201ENSMUST00000220021 2469 ntBASIC24.41■■□□□ 1.5
Shmt1P50431 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC24.4■■□□□ 1.5
Shmt1P50431 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Shmt1P50431 Gm9812-201ENSMUST00000061934 968 ntBASIC24.4■■□□□ 1.5
Shmt1P50431 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
Shmt1P50431 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
Shmt1P50431 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC24.39■■□□□ 1.5
Shmt1P50431 Scarna2-201ENSMUST00000157560 414 ntBASIC24.39■■□□□ 1.49
Shmt1P50431 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC24.39■■□□□ 1.49
Shmt1P50431 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC24.38■■□□□ 1.49
Shmt1P50431 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC24.38■■□□□ 1.49
Shmt1P50431 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC24.38■■□□□ 1.49
Shmt1P50431 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC24.38■■□□□ 1.49
Shmt1P50431 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
Shmt1P50431 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC24.38■■□□□ 1.49
Shmt1P50431 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Shmt1P50431 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC24.37■■□□□ 1.49
Shmt1P50431 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC24.37■■□□□ 1.49
Shmt1P50431 Gm4419-202ENSMUST00000226239 1431 ntBASIC24.37■■□□□ 1.49
Shmt1P50431 AC122317.2-201ENSMUST00000218708 1248 ntBASIC24.37■■□□□ 1.49
Shmt1P50431 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC24.36■■□□□ 1.49
Shmt1P50431 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Shmt1P50431 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Shmt1P50431 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC24.36■■□□□ 1.49
Shmt1P50431 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Shmt1P50431 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC24.35■■□□□ 1.49
Shmt1P50431 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
Shmt1P50431 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Shmt1P50431 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Shmt1P50431 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Shmt1P50431 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.49
Shmt1P50431 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
Shmt1P50431 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
Shmt1P50431 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC24.33■■□□□ 1.49
Shmt1P50431 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC24.32■■□□□ 1.48
Shmt1P50431 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
Shmt1P50431 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
Shmt1P50431 Gm16437-201ENSMUST00000025669 507 ntBASIC24.32■■□□□ 1.48
Shmt1P50431 Gm9806-201ENSMUST00000051080 552 ntBASIC24.31■■□□□ 1.48
Shmt1P50431 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Shmt1P50431 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC24.3■■□□□ 1.48
Shmt1P50431 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
Shmt1P50431 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC24.3■■□□□ 1.48
Shmt1P50431 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
Shmt1P50431 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC24.29■■□□□ 1.48
Shmt1P50431 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Shmt1P50431 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Shmt1P50431 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
Shmt1P50431 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
Shmt1P50431 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Shmt1P50431 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC24.28■■□□□ 1.48
Shmt1P50431 Cap2-205ENSMUST00000225824 1634 ntBASIC24.28■■□□□ 1.48
Shmt1P50431 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Shmt1P50431 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Shmt1P50431 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC24.27■■□□□ 1.48
Shmt1P50431 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC24.26■■□□□ 1.47
Shmt1P50431 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Shmt1P50431 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
Shmt1P50431 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Shmt1P50431 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC24.26■■□□□ 1.47
Shmt1P50431 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
Shmt1P50431 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
Shmt1P50431 Gm9910-201ENSMUST00000195385 1550 ntBASIC24.25■■□□□ 1.47
Shmt1P50431 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
Shmt1P50431 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Shmt1P50431 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
Shmt1P50431 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
Shmt1P50431 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
Shmt1P50431 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Shmt1P50431 Gm11687-201ENSMUST00000118911 886 ntBASIC24.23■■□□□ 1.47
Shmt1P50431 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Shmt1P50431 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Shmt1P50431 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC24.22■■□□□ 1.47
Shmt1P50431 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC24.22■■□□□ 1.47
Shmt1P50431 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC24.21■■□□□ 1.47
Shmt1P50431 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Shmt1P50431 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC24.21■■□□□ 1.47
Shmt1P50431 AC153911.1-201ENSMUST00000220378 758 ntBASIC24.21■■□□□ 1.47
Shmt1P50431 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Retrieved 100 of 76,532 protein–RNA pairs in 75.2 ms