Protein–RNA interactions for Protein: P50220

Nkx2-1, Homeobox protein Nkx-2.1, mousemouse

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-1P50220 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Nkx2-1P50220 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC18.93■□□□□ 0.62
Nkx2-1P50220 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Nkx2-1P50220 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC18.93■□□□□ 0.62
Nkx2-1P50220 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Nkx2-1P50220 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Nkx2-1P50220 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Nkx2-1P50220 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
Nkx2-1P50220 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
Nkx2-1P50220 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Nkx2-1P50220 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Nkx2-1P50220 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Nkx2-1P50220 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Nkx2-1P50220 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Nkx2-1P50220 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Nkx2-1P50220 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Nkx2-1P50220 Gm37847-201ENSMUST00000192163 1497 ntBASIC18.9■□□□□ 0.62
Nkx2-1P50220 Gm31748-201ENSMUST00000194938 1497 ntBASIC18.9■□□□□ 0.62
Nkx2-1P50220 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Nkx2-1P50220 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
Nkx2-1P50220 Tdp2-203ENSMUST00000223804 1136 ntBASIC18.89■□□□□ 0.61
Nkx2-1P50220 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Nkx2-1P50220 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Nkx2-1P50220 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
Nkx2-1P50220 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Nkx2-1P50220 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Nkx2-1P50220 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Nkx2-1P50220 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Nkx2-1P50220 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Nkx2-1P50220 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Nkx2-1P50220 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
Nkx2-1P50220 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Nkx2-1P50220 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Nkx2-1P50220 Particl-201ENSMUST00000205370 1560 ntBASIC18.86■□□□□ 0.61
Nkx2-1P50220 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Nkx2-1P50220 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC18.86■□□□□ 0.61
Nkx2-1P50220 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Nkx2-1P50220 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Nkx2-1P50220 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Nkx2-1P50220 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Nkx2-1P50220 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Nkx2-1P50220 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Nkx2-1P50220 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC18.85■□□□□ 0.61
Nkx2-1P50220 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Nkx2-1P50220 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Nkx2-1P50220 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
Nkx2-1P50220 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
Nkx2-1P50220 H3f3aos-201ENSMUST00000097448 2905 ntBASIC18.85■□□□□ 0.61
Nkx2-1P50220 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Nkx2-1P50220 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC18.85■□□□□ 0.61
Nkx2-1P50220 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC18.84■□□□□ 0.61
Nkx2-1P50220 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Nkx2-1P50220 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC18.84■□□□□ 0.61
Nkx2-1P50220 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Nkx2-1P50220 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Nkx2-1P50220 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
Nkx2-1P50220 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
Nkx2-1P50220 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
Nkx2-1P50220 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Nkx2-1P50220 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Nkx2-1P50220 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Nkx2-1P50220 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Nkx2-1P50220 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Nkx2-1P50220 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Nkx2-1P50220 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC18.82■□□□□ 0.6
Nkx2-1P50220 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Nkx2-1P50220 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Nkx2-1P50220 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Nkx2-1P50220 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Nkx2-1P50220 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Nkx2-1P50220 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Nkx2-1P50220 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
Nkx2-1P50220 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Nkx2-1P50220 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Nkx2-1P50220 Gm42699-201ENSMUST00000198104 1657 ntBASIC18.81■□□□□ 0.6
Nkx2-1P50220 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Nkx2-1P50220 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Nkx2-1P50220 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Nkx2-1P50220 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC18.8■□□□□ 0.6
Nkx2-1P50220 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Nkx2-1P50220 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Nkx2-1P50220 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Nkx2-1P50220 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Nkx2-1P50220 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Nkx2-1P50220 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Nkx2-1P50220 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Nkx2-1P50220 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Nkx2-1P50220 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Nkx2-1P50220 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Nkx2-1P50220 Gm9397-201ENSMUST00000200125 605 ntBASIC18.78■□□□□ 0.6
Nkx2-1P50220 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Nkx2-1P50220 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Nkx2-1P50220 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Nkx2-1P50220 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
Nkx2-1P50220 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Nkx2-1P50220 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Nkx2-1P50220 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Nkx2-1P50220 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Nkx2-1P50220 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Nkx2-1P50220 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 50.4 ms