Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Gm16437-201ENSMUST00000025669 507 ntBASIC21.74■■□□□ 1.07
Msx1P13297 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Msx1P13297 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC21.73■■□□□ 1.07
Msx1P13297 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC21.73■■□□□ 1.07
Msx1P13297 Pkd1-207ENSMUST00000228550 1050 ntBASIC21.73■■□□□ 1.07
Msx1P13297 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Msx1P13297 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC21.73■■□□□ 1.07
Msx1P13297 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC21.72■■□□□ 1.07
Msx1P13297 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC21.72■■□□□ 1.07
Msx1P13297 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Msx1P13297 AC154454.1-201ENSMUST00000225253 216 ntBASIC21.71■■□□□ 1.07
Msx1P13297 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Msx1P13297 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
Msx1P13297 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Msx1P13297 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
Msx1P13297 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC21.69■■□□□ 1.06
Msx1P13297 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Msx1P13297 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Msx1P13297 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Msx1P13297 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Msx1P13297 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Msx1P13297 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
Msx1P13297 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Msx1P13297 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC21.68■■□□□ 1.06
Msx1P13297 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
Msx1P13297 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Msx1P13297 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Msx1P13297 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Msx1P13297 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Msx1P13297 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Msx1P13297 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC21.66■■□□□ 1.06
Msx1P13297 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC21.66■■□□□ 1.06
Msx1P13297 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Msx1P13297 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
Msx1P13297 Gm7332-201ENSMUST00000118351 454 ntBASIC21.65■■□□□ 1.06
Msx1P13297 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Msx1P13297 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC21.64■■□□□ 1.05
Msx1P13297 Mir3960-201ENSMUST00000198213 73 ntBASIC21.64■■□□□ 1.05
Msx1P13297 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Msx1P13297 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Msx1P13297 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC21.63■■□□□ 1.05
Msx1P13297 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Msx1P13297 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
Msx1P13297 Gm37847-201ENSMUST00000192163 1497 ntBASIC21.63■■□□□ 1.05
Msx1P13297 Gm31748-201ENSMUST00000194938 1497 ntBASIC21.63■■□□□ 1.05
Msx1P13297 AC122428.3-201ENSMUST00000215551 2290 ntBASIC21.63■■□□□ 1.05
Msx1P13297 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC21.62■■□□□ 1.05
Msx1P13297 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Msx1P13297 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Msx1P13297 AC153890.1-201ENSMUST00000220021 2469 ntBASIC21.61■■□□□ 1.05
Msx1P13297 Gm15039-201ENSMUST00000118914 875 ntBASIC21.61■■□□□ 1.05
Msx1P13297 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Msx1P13297 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Msx1P13297 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Msx1P13297 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
Msx1P13297 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Msx1P13297 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Msx1P13297 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Msx1P13297 Gm27502-201ENSMUST00000183495 199 ntBASIC21.59■■□□□ 1.05
Msx1P13297 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
Msx1P13297 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Msx1P13297 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
Msx1P13297 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Msx1P13297 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Msx1P13297 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC21.59■■□□□ 1.05
Msx1P13297 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Msx1P13297 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC21.58■■□□□ 1.04
Msx1P13297 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Msx1P13297 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Msx1P13297 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Msx1P13297 Gm45364-201ENSMUST00000210883 159 ntBASIC21.57■■□□□ 1.04
Msx1P13297 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Msx1P13297 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Msx1P13297 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Msx1P13297 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Msx1P13297 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Msx1P13297 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC21.56■■□□□ 1.04
Msx1P13297 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Msx1P13297 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
Msx1P13297 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
Msx1P13297 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC21.55■■□□□ 1.04
Msx1P13297 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Msx1P13297 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Msx1P13297 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Msx1P13297 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
Msx1P13297 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Msx1P13297 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
Msx1P13297 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
Msx1P13297 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Msx1P13297 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Msx1P13297 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC21.53■■□□□ 1.04
Msx1P13297 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
Msx1P13297 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Msx1P13297 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Msx1P13297 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Msx1P13297 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Msx1P13297 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Msx1P13297 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
Msx1P13297 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Msx1P13297 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Retrieved 100 of 76,532 protein–RNA pairs in 36.2 ms