Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Lmx1bO88609 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
Lmx1bO88609 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Lmx1bO88609 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC20.79■□□□□ 0.92
Lmx1bO88609 Gm11687-201ENSMUST00000118911 886 ntBASIC20.79■□□□□ 0.92
Lmx1bO88609 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC20.79■□□□□ 0.92
Lmx1bO88609 Gm13889-201ENSMUST00000099689 1386 ntBASIC20.79■□□□□ 0.92
Lmx1bO88609 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC20.79■□□□□ 0.92
Lmx1bO88609 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Lmx1bO88609 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
Lmx1bO88609 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Lmx1bO88609 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Lmx1bO88609 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Lmx1bO88609 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC20.77■□□□□ 0.92
Lmx1bO88609 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC20.77■□□□□ 0.92
Lmx1bO88609 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC20.77■□□□□ 0.92
Lmx1bO88609 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC20.77■□□□□ 0.92
Lmx1bO88609 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Lmx1bO88609 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Lmx1bO88609 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Lmx1bO88609 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC20.76■□□□□ 0.91
Lmx1bO88609 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Lmx1bO88609 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Lmx1bO88609 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Lmx1bO88609 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Lmx1bO88609 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Lmx1bO88609 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
Lmx1bO88609 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Lmx1bO88609 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Lmx1bO88609 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Lmx1bO88609 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
Lmx1bO88609 Gm37847-201ENSMUST00000192163 1497 ntBASIC20.73■□□□□ 0.91
Lmx1bO88609 Gm31748-201ENSMUST00000194938 1497 ntBASIC20.73■□□□□ 0.91
Lmx1bO88609 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Lmx1bO88609 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Lmx1bO88609 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Lmx1bO88609 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Lmx1bO88609 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Lmx1bO88609 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Lmx1bO88609 Gm12818-201ENSMUST00000117562 1349 ntBASIC20.72■□□□□ 0.91
Lmx1bO88609 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Lmx1bO88609 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC20.71■□□□□ 0.91
Lmx1bO88609 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Lmx1bO88609 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Lmx1bO88609 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Lmx1bO88609 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
Lmx1bO88609 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Lmx1bO88609 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Lmx1bO88609 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC20.69■□□□□ 0.9
Lmx1bO88609 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Lmx1bO88609 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Lmx1bO88609 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Lmx1bO88609 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Lmx1bO88609 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC20.67■□□□□ 0.9
Lmx1bO88609 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC20.66■□□□□ 0.9
Lmx1bO88609 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Lmx1bO88609 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC20.66■□□□□ 0.9
Lmx1bO88609 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Lmx1bO88609 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Lmx1bO88609 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Lmx1bO88609 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Lmx1bO88609 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Lmx1bO88609 Gm14121-201ENSMUST00000121441 1380 ntBASIC20.65■□□□□ 0.9
Lmx1bO88609 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Lmx1bO88609 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Lmx1bO88609 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Lmx1bO88609 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC20.64■□□□□ 0.9
Lmx1bO88609 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Lmx1bO88609 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
Lmx1bO88609 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Lmx1bO88609 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC20.64■□□□□ 0.89
Lmx1bO88609 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC20.64■□□□□ 0.89
Lmx1bO88609 Gm27502-201ENSMUST00000183495 199 ntBASIC20.64■□□□□ 0.89
Lmx1bO88609 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Lmx1bO88609 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Lmx1bO88609 AC122428.3-201ENSMUST00000215551 2290 ntBASIC20.64■□□□□ 0.89
Lmx1bO88609 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Lmx1bO88609 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC20.63■□□□□ 0.89
Lmx1bO88609 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Lmx1bO88609 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Lmx1bO88609 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Lmx1bO88609 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC20.62■□□□□ 0.89
Lmx1bO88609 Gm12366-201ENSMUST00000121722 873 ntBASIC20.62■□□□□ 0.89
Lmx1bO88609 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC20.62■□□□□ 0.89
Lmx1bO88609 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC20.62■□□□□ 0.89
Lmx1bO88609 Gm5786-201ENSMUST00000085368 882 ntBASIC20.62■□□□□ 0.89
Lmx1bO88609 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Lmx1bO88609 Gm9812-201ENSMUST00000061934 968 ntBASIC20.61■□□□□ 0.89
Lmx1bO88609 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Lmx1bO88609 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Lmx1bO88609 Gm9910-201ENSMUST00000195385 1550 ntBASIC20.6■□□□□ 0.89
Lmx1bO88609 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Lmx1bO88609 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Lmx1bO88609 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Lmx1bO88609 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC20.59■□□□□ 0.89
Lmx1bO88609 AC122317.2-201ENSMUST00000218708 1248 ntBASIC20.59■□□□□ 0.89
Lmx1bO88609 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Lmx1bO88609 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Lmx1bO88609 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Lmx1bO88609 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 10.9 ms