Protein–RNA interactions for Protein: O88544

Cops4, COP9 signalosome complex subunit 4, mousemouse

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cops4O88544 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC21.12■□□□□ 0.97
Cops4O88544 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
Cops4O88544 AC157572.2-201ENSMUST00000226970 908 ntBASIC21.11■□□□□ 0.97
Cops4O88544 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC21.11■□□□□ 0.97
Cops4O88544 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Cops4O88544 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Cops4O88544 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Cops4O88544 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Cops4O88544 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Cops4O88544 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC21.1■□□□□ 0.97
Cops4O88544 Gm9397-201ENSMUST00000200125 605 ntBASIC21.1■□□□□ 0.97
Cops4O88544 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Cops4O88544 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Cops4O88544 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Cops4O88544 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Cops4O88544 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Cops4O88544 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC21.08■□□□□ 0.97
Cops4O88544 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Cops4O88544 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Cops4O88544 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cops4O88544 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC21.07■□□□□ 0.96
Cops4O88544 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cops4O88544 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cops4O88544 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cops4O88544 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Cops4O88544 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC21.06■□□□□ 0.96
Cops4O88544 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cops4O88544 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cops4O88544 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Cops4O88544 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Cops4O88544 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC21.05■□□□□ 0.96
Cops4O88544 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
Cops4O88544 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
Cops4O88544 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
Cops4O88544 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
Cops4O88544 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Cops4O88544 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Cops4O88544 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Cops4O88544 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
Cops4O88544 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Cops4O88544 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
Cops4O88544 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC21.03■□□□□ 0.96
Cops4O88544 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Cops4O88544 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Cops4O88544 Gm24970-201ENSMUST00000175582 82 ntBASIC21.03■□□□□ 0.96
Cops4O88544 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Cops4O88544 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Cops4O88544 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Cops4O88544 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Cops4O88544 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC21.02■□□□□ 0.96
Cops4O88544 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Cops4O88544 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
Cops4O88544 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Cops4O88544 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Cops4O88544 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cops4O88544 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cops4O88544 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Cops4O88544 Gm45855-201ENSMUST00000212546 880 ntBASIC21.01■□□□□ 0.95
Cops4O88544 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
Cops4O88544 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
Cops4O88544 Gm37847-201ENSMUST00000192163 1497 ntBASIC21■□□□□ 0.95
Cops4O88544 Gm31748-201ENSMUST00000194938 1497 ntBASIC21■□□□□ 0.95
Cops4O88544 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC21■□□□□ 0.95
Cops4O88544 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Cops4O88544 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC20.99■□□□□ 0.95
Cops4O88544 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Cops4O88544 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Cops4O88544 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
Cops4O88544 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Cops4O88544 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Cops4O88544 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Cops4O88544 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Cops4O88544 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
Cops4O88544 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
Cops4O88544 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Cops4O88544 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
Cops4O88544 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
Cops4O88544 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
Cops4O88544 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Cops4O88544 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cops4O88544 Gm42699-201ENSMUST00000198104 1657 ntBASIC20.96■□□□□ 0.95
Cops4O88544 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cops4O88544 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cops4O88544 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC20.96■□□□□ 0.95
Cops4O88544 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC20.95■□□□□ 0.94
Cops4O88544 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC20.95■□□□□ 0.94
Cops4O88544 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Cops4O88544 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC20.95■□□□□ 0.94
Cops4O88544 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC20.95■□□□□ 0.94
Cops4O88544 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC20.95■□□□□ 0.94
Cops4O88544 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cops4O88544 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cops4O88544 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cops4O88544 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cops4O88544 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Cops4O88544 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Cops4O88544 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cops4O88544 Particl-201ENSMUST00000205370 1560 ntBASIC20.93■□□□□ 0.94
Cops4O88544 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
Cops4O88544 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 407.2 ms