Protein–RNA interactions for Protein: E9Q735

Ube4a, Ubiquitin conjugation factor E4 A, mousemouse

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube4aE9Q735 AC153911.1-201ENSMUST00000220378 758 ntBASIC28.29■■■□□ 2.12
Ube4aE9Q735 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
Ube4aE9Q735 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC28.29■■■□□ 2.12
Ube4aE9Q735 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC28.28■■■□□ 2.12
Ube4aE9Q735 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
Ube4aE9Q735 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Ube4aE9Q735 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Ube4aE9Q735 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Ube4aE9Q735 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
Ube4aE9Q735 Gm7332-201ENSMUST00000118351 454 ntBASIC28.27■■■□□ 2.12
Ube4aE9Q735 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC28.27■■■□□ 2.12
Ube4aE9Q735 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC28.27■■■□□ 2.12
Ube4aE9Q735 Gm14523-201ENSMUST00000117260 558 ntBASIC28.25■■■□□ 2.11
Ube4aE9Q735 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
Ube4aE9Q735 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC28.25■■■□□ 2.11
Ube4aE9Q735 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC28.25■■■□□ 2.11
Ube4aE9Q735 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
Ube4aE9Q735 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
Ube4aE9Q735 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
Ube4aE9Q735 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
Ube4aE9Q735 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
Ube4aE9Q735 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
Ube4aE9Q735 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
Ube4aE9Q735 Terc-201ENSMUST00000082862 423 ntBASIC28.22■■■□□ 2.11
Ube4aE9Q735 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
Ube4aE9Q735 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC28.21■■■□□ 2.11
Ube4aE9Q735 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
Ube4aE9Q735 AC151971.4-201ENSMUST00000214717 704 ntBASIC28.21■■■□□ 2.11
Ube4aE9Q735 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
Ube4aE9Q735 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
Ube4aE9Q735 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC28.19■■■□□ 2.1
Ube4aE9Q735 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
Ube4aE9Q735 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC28.19■■■□□ 2.1
Ube4aE9Q735 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC28.19■■■□□ 2.1
Ube4aE9Q735 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC28.19■■■□□ 2.1
Ube4aE9Q735 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
Ube4aE9Q735 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC28.18■■■□□ 2.1
Ube4aE9Q735 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC28.17■■■□□ 2.1
Ube4aE9Q735 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
Ube4aE9Q735 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC28.16■■■□□ 2.1
Ube4aE9Q735 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
Ube4aE9Q735 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC28.15■■■□□ 2.1
Ube4aE9Q735 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
Ube4aE9Q735 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
Ube4aE9Q735 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
Ube4aE9Q735 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC28.14■■■□□ 2.1
Ube4aE9Q735 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC28.13■■■□□ 2.09
Ube4aE9Q735 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC28.13■■■□□ 2.09
Ube4aE9Q735 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC28.13■■■□□ 2.09
Ube4aE9Q735 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
Ube4aE9Q735 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC28.13■■■□□ 2.09
Ube4aE9Q735 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
Ube4aE9Q735 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
Ube4aE9Q735 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC28.11■■■□□ 2.09
Ube4aE9Q735 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
Ube4aE9Q735 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC28.1■■■□□ 2.09
Ube4aE9Q735 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
Ube4aE9Q735 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
Ube4aE9Q735 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC28.09■■■□□ 2.09
Ube4aE9Q735 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
Ube4aE9Q735 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC28.09■■■□□ 2.09
Ube4aE9Q735 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
Ube4aE9Q735 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC28.08■■■□□ 2.09
Ube4aE9Q735 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC28.08■■■□□ 2.09
Ube4aE9Q735 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
Ube4aE9Q735 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
Ube4aE9Q735 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC28.08■■■□□ 2.09
Ube4aE9Q735 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
Ube4aE9Q735 Gm4419-202ENSMUST00000226239 1431 ntBASIC28.07■■■□□ 2.08
Ube4aE9Q735 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
Ube4aE9Q735 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC28.06■■■□□ 2.08
Ube4aE9Q735 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
Ube4aE9Q735 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
Ube4aE9Q735 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
Ube4aE9Q735 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC28.05■■■□□ 2.08
Ube4aE9Q735 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC28.04■■■□□ 2.08
Ube4aE9Q735 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
Ube4aE9Q735 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
Ube4aE9Q735 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
Ube4aE9Q735 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
Ube4aE9Q735 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
Ube4aE9Q735 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
Ube4aE9Q735 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
Ube4aE9Q735 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC28■■■□□ 2.07
Ube4aE9Q735 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC28■■■□□ 2.07
Ube4aE9Q735 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC28■■■□□ 2.07
Ube4aE9Q735 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC28■■■□□ 2.07
Ube4aE9Q735 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC27.99■■■□□ 2.07
Ube4aE9Q735 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
Ube4aE9Q735 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
Ube4aE9Q735 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
Ube4aE9Q735 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC27.98■■■□□ 2.07
Ube4aE9Q735 Fezf2-202ENSMUST00000224023 1917 ntBASIC27.98■■■□□ 2.07
Ube4aE9Q735 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
Ube4aE9Q735 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC27.97■■■□□ 2.07
Ube4aE9Q735 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
Ube4aE9Q735 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC27.96■■■□□ 2.07
Ube4aE9Q735 Gm5067-201ENSMUST00000170449 1009 ntBASIC27.96■■■□□ 2.07
Ube4aE9Q735 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
Ube4aE9Q735 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC27.95■■■□□ 2.06
Retrieved 100 of 76,532 protein–RNA pairs in 17.5 ms