Protein–RNA interactions for Protein: A0A140T8P8

Trbv17, T cell receptor beta, variable 17 (Fragment), mousemouse

Predictions only

Length 114 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv17A0A140T8P8 AC122428.3-201ENSMUST00000215551 2290 ntBASIC17.49■□□□□ 0.39
Trbv17A0A140T8P8 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
Trbv17A0A140T8P8 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trbv17A0A140T8P8 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
Trbv17A0A140T8P8 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC17.48■□□□□ 0.39
Trbv17A0A140T8P8 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Trbv17A0A140T8P8 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trbv17A0A140T8P8 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trbv17A0A140T8P8 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trbv17A0A140T8P8 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC17.47■□□□□ 0.39
Trbv17A0A140T8P8 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trbv17A0A140T8P8 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trbv17A0A140T8P8 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
Trbv17A0A140T8P8 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
Trbv17A0A140T8P8 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
Trbv17A0A140T8P8 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trbv17A0A140T8P8 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.38
Trbv17A0A140T8P8 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trbv17A0A140T8P8 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Trbv17A0A140T8P8 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trbv17A0A140T8P8 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trbv17A0A140T8P8 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC17.44■□□□□ 0.38
Trbv17A0A140T8P8 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trbv17A0A140T8P8 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trbv17A0A140T8P8 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC17.43■□□□□ 0.38
Trbv17A0A140T8P8 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC17.43■□□□□ 0.38
Trbv17A0A140T8P8 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
Trbv17A0A140T8P8 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trbv17A0A140T8P8 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trbv17A0A140T8P8 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Trbv17A0A140T8P8 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC17.42■□□□□ 0.38
Trbv17A0A140T8P8 Gm7432-201ENSMUST00000210343 879 ntBASIC17.42■□□□□ 0.38
Trbv17A0A140T8P8 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trbv17A0A140T8P8 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Trbv17A0A140T8P8 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Trbv17A0A140T8P8 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trbv17A0A140T8P8 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Trbv17A0A140T8P8 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC17.41■□□□□ 0.38
Trbv17A0A140T8P8 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC17.41■□□□□ 0.38
Trbv17A0A140T8P8 AC131739.1-201ENSMUST00000221692 1245 ntBASIC17.41■□□□□ 0.38
Trbv17A0A140T8P8 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trbv17A0A140T8P8 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trbv17A0A140T8P8 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Trbv17A0A140T8P8 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trbv17A0A140T8P8 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trbv17A0A140T8P8 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trbv17A0A140T8P8 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trbv17A0A140T8P8 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trbv17A0A140T8P8 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trbv17A0A140T8P8 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trbv17A0A140T8P8 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Trbv17A0A140T8P8 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trbv17A0A140T8P8 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Trbv17A0A140T8P8 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Trbv17A0A140T8P8 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trbv17A0A140T8P8 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trbv17A0A140T8P8 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trbv17A0A140T8P8 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trbv17A0A140T8P8 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trbv17A0A140T8P8 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Trbv17A0A140T8P8 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trbv17A0A140T8P8 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC17.36■□□□□ 0.37
Trbv17A0A140T8P8 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC17.36■□□□□ 0.37
Trbv17A0A140T8P8 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trbv17A0A140T8P8 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Trbv17A0A140T8P8 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trbv17A0A140T8P8 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trbv17A0A140T8P8 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trbv17A0A140T8P8 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trbv17A0A140T8P8 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC17.34■□□□□ 0.37
Trbv17A0A140T8P8 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Trbv17A0A140T8P8 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trbv17A0A140T8P8 Gm37136-201ENSMUST00000194368 194 ntBASIC17.34■□□□□ 0.37
Trbv17A0A140T8P8 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trbv17A0A140T8P8 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.37
Trbv17A0A140T8P8 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trbv17A0A140T8P8 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC17.33■□□□□ 0.37
Trbv17A0A140T8P8 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trbv17A0A140T8P8 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trbv17A0A140T8P8 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trbv17A0A140T8P8 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trbv17A0A140T8P8 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trbv17A0A140T8P8 Gm11599-201ENSMUST00000118720 878 ntBASIC17.32■□□□□ 0.36
Trbv17A0A140T8P8 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC17.32■□□□□ 0.36
Trbv17A0A140T8P8 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Trbv17A0A140T8P8 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trbv17A0A140T8P8 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trbv17A0A140T8P8 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trbv17A0A140T8P8 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trbv17A0A140T8P8 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trbv17A0A140T8P8 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Trbv17A0A140T8P8 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Trbv17A0A140T8P8 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Trbv17A0A140T8P8 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trbv17A0A140T8P8 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
Trbv17A0A140T8P8 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trbv17A0A140T8P8 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC17.29■□□□□ 0.36
Trbv17A0A140T8P8 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trbv17A0A140T8P8 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trbv17A0A140T8P8 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 149.8 ms