RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 PKLRP30613 574 aa18.53■□□□□ 0.56
SQSTM1-216ENST00000626660 CFHR1Q03591 330 aa18.53■□□□□ 0.56
SQSTM1-216ENST00000626660 TRA2AQ13595 282 aaKnown RBP eCLIP18.53■□□□□ 0.56
SQSTM1-216ENST00000626660 ISXQ2M1V0 245 aa18.53■□□□□ 0.56
SQSTM1-216ENST00000626660 ADGRD1Q6QNK2 874 aa18.53■□□□□ 0.56
SQSTM1-216ENST00000626660 COL27A1Q8IZC6 1860 aaPredicted RBP18.53■□□□□ 0.56
SQSTM1-216ENST00000626660 MREGQ8N565 214 aa18.53■□□□□ 0.56
SQSTM1-216ENST00000626660 MTBPQ96DY7 904 aa18.53■□□□□ 0.56
SQSTM1-216ENST00000626660 TGM7Q96PF1 710 aa18.53■□□□□ 0.56
SQSTM1-216ENST00000626660 SLC12A9Q9BXP2 914 aa18.53■□□□□ 0.56
SQSTM1-216ENST00000626660 DERL2Q9GZP9 239 aa18.53■□□□□ 0.56
SQSTM1-216ENST00000626660 PARVBQ9HBI1 364 aa18.53■□□□□ 0.56
SQSTM1-216ENST00000626660 SNX15Q9NRS6 342 aa18.53■□□□□ 0.56
SQSTM1-216ENST00000626660 CTNNAL1Q9UBT7 734 aa18.53■□□□□ 0.56
SQSTM1-216ENST00000626660 ACOT9Q9Y305 439 aa18.53■□□□□ 0.56
SQSTM1-216ENST00000626660 ENTPD2Q9Y5L3 495 aa18.53■□□□□ 0.56
SQSTM1-216ENST00000626660 A0A087X1B8 175 aa18.52■□□□□ 0.56
SQSTM1-216ENST00000626660 IGHV5-10-1A0A0J9YXX1 117 aa18.52■□□□□ 0.56
SQSTM1-216ENST00000626660 IQANK1A0A1B0GTG1 560 aa18.52■□□□□ 0.56
SQSTM1-216ENST00000626660 PIPSLA2A3N6 862 aa18.52■□□□□ 0.56
SQSTM1-216ENST00000626660 HMX2A2RU54 273 aa18.52■□□□□ 0.56
SQSTM1-216ENST00000626660 ZNF839A8K0R7 811 aa18.52■□□□□ 0.56
SQSTM1-216ENST00000626660 C2orf74A8MZ97 194 aa18.52■□□□□ 0.56
SQSTM1-216ENST00000626660 MYO1CO00159 1063 aa18.52■□□□□ 0.56
SQSTM1-216ENST00000626660 BTN3A1O00481 513 aa18.52■□□□□ 0.56
SQSTM1-216ENST00000626660 WISP3O95389 354 aaPredicted RBP18.52■□□□□ 0.56
SQSTM1-216ENST00000626660 C9P02748 559 aa18.52■□□□□ 0.56
SQSTM1-216ENST00000626660 SHBGP04278 402 aa18.52■□□□□ 0.56
SQSTM1-216ENST00000626660 HIST1H2AGP0C0S8 130 aaPredicted RBP18.52■□□□□ 0.56
SQSTM1-216ENST00000626660 TPBGLP0DKB5 382 aa18.52■□□□□ 0.56
SQSTM1-216ENST00000626660 HOXB3P14651 431 aaPredicted RBP18.52■□□□□ 0.56
SQSTM1-216ENST00000626660 HIST1H2ADP20671 130 aa18.52■□□□□ 0.56
SQSTM1-216ENST00000626660 CCKBRP32239 447 aa18.52■□□□□ 0.56
SQSTM1-216ENST00000626660 HSD17B2P37059 387 aa18.52■□□□□ 0.56
SQSTM1-216ENST00000626660 GFERP55789 205 aa18.52■□□□□ 0.56
SQSTM1-216ENST00000626660 ATP6V0D1P61421 351 aa18.52■□□□□ 0.56
SQSTM1-216ENST00000626660 IFFO1Q0D2I5 559 aa18.52■□□□□ 0.56
SQSTM1-216ENST00000626660 TARDBPQ13148 414 aaKnown RBP eCLIP18.52■□□□□ 0.56
SQSTM1-216ENST00000626660 GRB7Q14451 532 aa18.52■□□□□ 0.56
SQSTM1-216ENST00000626660 CCSMST1Q4G0I0 132 aa18.52■□□□□ 0.56
SQSTM1-216ENST00000626660 EEF1AKMT2Q5JPI9 291 aaKnown RBP18.52■□□□□ 0.56
SQSTM1-216ENST00000626660 SNAP47Q5SQN1 464 aa18.52■□□□□ 0.56
SQSTM1-216ENST00000626660 ANKS6Q68DC2 871 aa18.52■□□□□ 0.56
SQSTM1-216ENST00000626660 TMPRSS9Q7Z410 1059 aa18.52■□□□□ 0.56
SQSTM1-216ENST00000626660 B3GNT8Q7Z7M8 397 aa18.52■□□□□ 0.56
SQSTM1-216ENST00000626660 RASGRP3Q8IV61 690 aa18.52■□□□□ 0.56
SQSTM1-216ENST00000626660 SLITRK4Q8IW52 837 aa18.52■□□□□ 0.56
SQSTM1-216ENST00000626660 OR2L8Q8NGY9 312 aa18.52■□□□□ 0.56
SQSTM1-216ENST00000626660 ANKRD49Q8WVL7 239 aa18.52■□□□□ 0.56
SQSTM1-216ENST00000626660 HIST1H2AHQ96KK5 128 aa18.52■□□□□ 0.56
SQSTM1-216ENST00000626660 CCDC74BQ96LY2 380 aa18.52■□□□□ 0.56
SQSTM1-216ENST00000626660 IL17FQ96PD4 163 aa18.52■□□□□ 0.56
SQSTM1-216ENST00000626660 CD180Q99467 661 aa18.52■□□□□ 0.56
SQSTM1-216ENST00000626660 HIST1H2AJQ99878 128 aa18.52■□□□□ 0.56
SQSTM1-216ENST00000626660 H2AFJQ9BTM1 129 aa18.52■□□□□ 0.56
SQSTM1-216ENST00000626660 SEMA6CQ9H3T2 930 aa18.52■□□□□ 0.56
SQSTM1-216ENST00000626660 AKAP7Q9P0M2 348 aaPredicted RBP18.52■□□□□ 0.56
SQSTM1-216ENST00000626660 TMEM9Q9P0T7 183 aa18.52■□□□□ 0.56
SQSTM1-216ENST00000626660 KLHL3Q9UH77 587 aa18.52■□□□□ 0.56
SQSTM1-216ENST00000626660 KIF26BQ2KJY2 2108 aa18.52■□□□□ 0.55
SQSTM1-216ENST00000626660 PCM1Q15154 2024 aa18.51■□□□□ 0.55
SQSTM1-216ENST00000626660 FAM149AA5PLN7 773 aa18.51■□□□□ 0.55
SQSTM1-216ENST00000626660 NPEPPSL1A6NEC2 478 aa18.51■□□□□ 0.55
SQSTM1-216ENST00000626660 BTN3A3O00478 584 aa18.51■□□□□ 0.55
SQSTM1-216ENST00000626660 RASSF9O75901 435 aa18.51■□□□□ 0.55
SQSTM1-216ENST00000626660 CHRM5P08912 532 aaPredicted RBP18.51■□□□□ 0.55
SQSTM1-216ENST00000626660 ENO2P09104 434 aaPredicted RBP18.51■□□□□ 0.55
SQSTM1-216ENST00000626660 NUDT17P0C025 328 aa18.51■□□□□ 0.55
SQSTM1-216ENST00000626660 SLC35E2BP0CK96 405 aa18.51■□□□□ 0.55
SQSTM1-216ENST00000626660 THRAP10827 490 aa18.51■□□□□ 0.55
SQSTM1-216ENST00000626660 MPSTP25325 297 aa18.51■□□□□ 0.55
SQSTM1-216ENST00000626660 GCAP28676 217 aa18.51■□□□□ 0.55
SQSTM1-216ENST00000626660 SLC26A3P40879 764 aa18.51■□□□□ 0.55
SQSTM1-216ENST00000626660 PDX1P52945 283 aa18.51■□□□□ 0.55
SQSTM1-216ENST00000626660 ZFP36L1Q07352 338 aaKnown RBP18.51■□□□□ 0.55
SQSTM1-216ENST00000626660 CSHL1Q14406 222 aa18.51■□□□□ 0.55
SQSTM1-216ENST00000626660 ARHGAP19Q14CB8 494 aa18.51■□□□□ 0.55
SQSTM1-216ENST00000626660 ZNF574Q6ZN55 896 aaPredicted RBP18.51■□□□□ 0.55
SQSTM1-216ENST00000626660 ADAMTSL2Q86TH1 951 aa18.51■□□□□ 0.55
SQSTM1-216ENST00000626660 ADGRF3Q8IZF5 1079 aa18.51■□□□□ 0.55
SQSTM1-216ENST00000626660 SLC22A18Q96BI1 424 aa18.51■□□□□ 0.55
SQSTM1-216ENST00000626660 PKP4Q99569 1192 aa18.51■□□□□ 0.55
SQSTM1-216ENST00000626660 ADAMTS6Q9UKP5 1117 aa18.51■□□□□ 0.55
SQSTM1-216ENST00000626660 NOVA2Q9UNW9 492 aaKnown RBP18.51■□□□□ 0.55
SQSTM1-216ENST00000626660 PDE10AQ9Y233 779 aa18.51■□□□□ 0.55
SQSTM1-216ENST00000626660 A0A096LPK6 155 aa18.5■□□□□ 0.55
SQSTM1-216ENST00000626660 CCDC151A5D8V7 595 aa18.5■□□□□ 0.55
SQSTM1-216ENST00000626660 TLCD2A6NGC4 264 aa18.5■□□□□ 0.55
SQSTM1-216ENST00000626660 ALDOAP04075 364 aaKnown RBP18.5■□□□□ 0.55
SQSTM1-216ENST00000626660 MPOP05164 745 aa18.5■□□□□ 0.55
SQSTM1-216ENST00000626660 C2P06681 752 aa18.5■□□□□ 0.55
SQSTM1-216ENST00000626660 LTA4HP09960 611 aaKnown RBP18.5■□□□□ 0.55
SQSTM1-216ENST00000626660 AP1S2P56377 157 aa18.5■□□□□ 0.55
SQSTM1-216ENST00000626660 KIR2DS3Q14952 304 aa18.5■□□□□ 0.55
SQSTM1-216ENST00000626660 CACHD1Q5VU97 1274 aa18.5■□□□□ 0.55
SQSTM1-216ENST00000626660 FAM92BQ6ZTR7 304 aa18.5■□□□□ 0.55
SQSTM1-216ENST00000626660 FRA10AC1Q70Z53 315 aa18.5■□□□□ 0.55
SQSTM1-216ENST00000626660 ISL2Q96A47 359 aa18.5■□□□□ 0.55
SQSTM1-216ENST00000626660 LIN37Q96GY3 246 aaPredicted RBP18.5■□□□□ 0.55
SQSTM1-216ENST00000626660 UBXN10Q96LJ8 280 aa18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms