RNA–Protein interactions for RNA: ENST00000616033.4

MSH6-214, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 3,429 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-214ENST00000616033 PNPLA4P41247 253 aa12.9□□□□□ -0.35
MSH6-214ENST00000616033 HCAR3P49019 387 aa12.9□□□□□ -0.35
MSH6-214ENST00000616033 CRISP3P54108 245 aa12.9□□□□□ -0.35
MSH6-214ENST00000616033 UBE3AQ05086 875 aa12.9□□□□□ -0.35
MSH6-214ENST00000616033 FOXM1Q08050 763 aa12.9□□□□□ -0.35
MSH6-214ENST00000616033 SCAPQ12770 1279 aa12.9□□□□□ -0.35
MSH6-214ENST00000616033 CYP27C1Q4G0S4 372 aa12.9□□□□□ -0.35
MSH6-214ENST00000616033 INTS6LQ5JSJ4 861 aaKnown RBP12.9□□□□□ -0.35
MSH6-214ENST00000616033 KDELC1Q6UW63 502 aa12.9□□□□□ -0.35
MSH6-214ENST00000616033 TRIM48Q8IWZ4 208 aa12.9□□□□□ -0.35
MSH6-214ENST00000616033 SVOPQ8N4V2 548 aa12.9□□□□□ -0.35
MSH6-214ENST00000616033 PARP16Q8N5Y8 322 aa12.9□□□□□ -0.35
MSH6-214ENST00000616033 PAPD5Q8NDF8 572 aaKnown RBP12.9□□□□□ -0.35
MSH6-214ENST00000616033 ANKK1Q8NFD2 765 aa12.9□□□□□ -0.35
MSH6-214ENST00000616033 C16orf70Q9BSU1 422 aa12.9□□□□□ -0.35
MSH6-214ENST00000616033 NFKBIZQ9BYH8 718 aa12.9□□□□□ -0.35
MSH6-214ENST00000616033 KRT87PA6NCN2 255 aa12.89□□□□□ -0.35
MSH6-214ENST00000616033 F8W810 466 aa12.89□□□□□ -0.35
MSH6-214ENST00000616033 CSF2P04141 144 aa12.89□□□□□ -0.35
MSH6-214ENST00000616033 PRKCAP17252 672 aa12.89□□□□□ -0.35
MSH6-214ENST00000616033 PRKACAP17612 351 aa12.89□□□□□ -0.35
MSH6-214ENST00000616033 CD6P30203 668 aa12.89□□□□□ -0.35
MSH6-214ENST00000616033 SCNN1GP51170 649 aa12.89□□□□□ -0.35
MSH6-214ENST00000616033 TIAL1Q01085 375 aaKnown RBP eCLIP12.89□□□□□ -0.35
MSH6-214ENST00000616033 CREMQ03060 361 aa12.89□□□□□ -0.35
MSH6-214ENST00000616033 CPSF6Q16630 551 aaKnown RBP eCLIP12.89□□□□□ -0.35
MSH6-214ENST00000616033 PM20D1Q6GTS8 502 aa12.89□□□□□ -0.35
MSH6-214ENST00000616033 GDPD3Q7L5L3 318 aa12.89□□□□□ -0.35
MSH6-214ENST00000616033 CYP2U1Q7Z449 544 aa12.89□□□□□ -0.35
MSH6-214ENST00000616033 RASAL3Q86YV0 1011 aa12.89□□□□□ -0.35
MSH6-214ENST00000616033 HIPK1Q86Z02 1210 aa12.89□□□□□ -0.35
MSH6-214ENST00000616033 LRRC49Q8IUZ0 686 aa12.89□□□□□ -0.35
MSH6-214ENST00000616033 CACTIN-AS1Q8N1I8 211 aa12.89□□□□□ -0.35
MSH6-214ENST00000616033 OR6J1Q8NGC5 347 aa12.89□□□□□ -0.35
MSH6-214ENST00000616033 PCNPQ8WW12 178 aaKnown RBP12.89□□□□□ -0.35
MSH6-214ENST00000616033 CNDP2Q96KP4 475 aaKnown RBP12.89□□□□□ -0.35
MSH6-214ENST00000616033 RPRD1AQ96P16 312 aaPredicted RBP12.89□□□□□ -0.35
MSH6-214ENST00000616033 MFSD1Q9H3U5 465 aa12.89□□□□□ -0.35
MSH6-214ENST00000616033 ACOT13Q9NPJ3 140 aa12.89□□□□□ -0.35
MSH6-214ENST00000616033 C8orf4Q9NR00 106 aa12.89□□□□□ -0.35
MSH6-214ENST00000616033 KRT84Q9NSB2 600 aa12.89□□□□□ -0.35
MSH6-214ENST00000616033 ABI2Q9NYB9 513 aaPredicted RBP12.89□□□□□ -0.35
MSH6-214ENST00000616033 RBPJLQ9UBG7 517 aa12.89□□□□□ -0.35
MSH6-214ENST00000616033 ZNF639Q9UID6 485 aa12.89□□□□□ -0.35
MSH6-214ENST00000616033 CENPXA8MT69 81 aa12.89□□□□□ -0.35
MSH6-214ENST00000616033 LOC110117498-PIK3R3F6TDL0 507 aa12.89□□□□□ -0.35
MSH6-214ENST00000616033 MYL3P08590 195 aa12.89□□□□□ -0.35
MSH6-214ENST00000616033 KRT20P35900 424 aa12.89□□□□□ -0.35
MSH6-214ENST00000616033 HNRNPFP52597 415 aaKnown RBP12.89□□□□□ -0.35
MSH6-214ENST00000616033 TOP3AQ13472 1001 aaPredicted RBP12.89□□□□□ -0.35
MSH6-214ENST00000616033 PWP1Q13610 501 aa12.89□□□□□ -0.35
MSH6-214ENST00000616033 TIGD7Q6NT04 549 aaPredicted RBP12.89□□□□□ -0.35
MSH6-214ENST00000616033 ZCCHC8Q6NZY4 707 aaKnown RBP12.89□□□□□ -0.35
MSH6-214ENST00000616033 OR5K1Q8NHB7 308 aa12.89□□□□□ -0.35
MSH6-214ENST00000616033 SMARCD1Q96GM5 515 aa12.89□□□□□ -0.35
MSH6-214ENST00000616033 ASB2Q96Q27 587 aa12.89□□□□□ -0.35
MSH6-214ENST00000616033 DPH2Q9BQC3 489 aaPredicted RBP12.89□□□□□ -0.35
MSH6-214ENST00000616033 COPS4Q9BT78 406 aa12.89□□□□□ -0.35
MSH6-214ENST00000616033 OPTCQ9UBM4 332 aa12.89□□□□□ -0.35
MSH6-214ENST00000616033 PCTPQ9UKL6 214 aa12.89□□□□□ -0.35
MSH6-214ENST00000616033 TESMINQ9Y4I5 508 aa12.89□□□□□ -0.35
MSH6-214ENST00000616033 LAMA2P24043 3122 aaKnown RBP12.89□□□□□ -0.35
MSH6-214ENST00000616033 A0A1W2PQ72 361 aa12.88□□□□□ -0.35
MSH6-214ENST00000616033 KERAO60938 352 aa12.88□□□□□ -0.35
MSH6-214ENST00000616033 HK3P52790 923 aa12.88□□□□□ -0.35
MSH6-214ENST00000616033 ZXDBP98169 803 aa12.88□□□□□ -0.35
MSH6-214ENST00000616033 CD83Q01151 205 aa12.88□□□□□ -0.35
MSH6-214ENST00000616033 MXD1Q05195 221 aa12.88□□□□□ -0.35
MSH6-214ENST00000616033 BCL7AQ4VC05 210 aa12.88□□□□□ -0.35
MSH6-214ENST00000616033 SPANXN2Q5MJ10 180 aa12.88□□□□□ -0.35
MSH6-214ENST00000616033 GALNT12Q8IXK2 581 aa12.88□□□□□ -0.35
MSH6-214ENST00000616033 SPERTQ8NA61 448 aa12.88□□□□□ -0.35
MSH6-214ENST00000616033 KCTD13Q8WZ19 329 aa12.88□□□□□ -0.35
MSH6-214ENST00000616033 ULK4Q96C45 1275 aa12.88□□□□□ -0.35
MSH6-214ENST00000616033 VMP1Q96GC9 406 aa12.88□□□□□ -0.35
MSH6-214ENST00000616033 ZNF300Q96RE9 604 aaPredicted RBP12.88□□□□□ -0.35
MSH6-214ENST00000616033 INPP5KQ9BT40 448 aa12.88□□□□□ -0.35
MSH6-214ENST00000616033 MROH8Q9H579 483 aa12.88□□□□□ -0.35
MSH6-214ENST00000616033 IPPKQ9H8X2 491 aa12.88□□□□□ -0.35
MSH6-214ENST00000616033 SYTL2Q9HCH5 934 aa12.88□□□□□ -0.35
MSH6-214ENST00000616033 TEKT2Q9UIF3 430 aa12.88□□□□□ -0.35
MSH6-214ENST00000616033 TMEFF2Q9UIK5 374 aaPredicted RBP12.88□□□□□ -0.35
MSH6-214ENST00000616033 TANC1Q9C0D5 1861 aa12.88□□□□□ -0.35
MSH6-214ENST00000616033 CDK2AP1O14519 115 aa12.88□□□□□ -0.35
MSH6-214ENST00000616033 TSPAN4O14817 238 aa12.88□□□□□ -0.35
MSH6-214ENST00000616033 CPSF4O95639 269 aaKnown RBP12.88□□□□□ -0.35
MSH6-214ENST00000616033 NTRK1P04629 796 aa12.88□□□□□ -0.35
MSH6-214ENST00000616033 SLC10A3P09131 477 aa12.88□□□□□ -0.35
MSH6-214ENST00000616033 DAPP51397 102 aa12.88□□□□□ -0.35
MSH6-214ENST00000616033 FCGRTP55899 365 aa12.88□□□□□ -0.35
MSH6-214ENST00000616033 MED22Q15528 200 aa12.88□□□□□ -0.35
MSH6-214ENST00000616033 NDUFA5Q16718 116 aa12.88□□□□□ -0.35
MSH6-214ENST00000616033 TIGD6Q17RP2 521 aa12.88□□□□□ -0.35
MSH6-214ENST00000616033 DPP9Q86TI2 863 aa12.88□□□□□ -0.35
MSH6-214ENST00000616033 BHMTQ93088 406 aa12.88□□□□□ -0.35
MSH6-214ENST00000616033 EFHD2Q96C19 240 aaPredicted RBP12.88□□□□□ -0.35
MSH6-214ENST00000616033 AARSD1Q9BTE6 412 aaKnown RBP12.88□□□□□ -0.35
MSH6-214ENST00000616033 ACTL8Q9H568 366 aa12.88□□□□□ -0.35
MSH6-214ENST00000616033 NSUN3Q9H649 340 aaKnown RBP12.88□□□□□ -0.35
MSH6-214ENST00000616033 BTBD3Q9Y2F9 522 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms