RNA–Protein interactions for RNA: ENST00000612946.4

TTC28-208, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TTC28, Length 11,274 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-208ENST00000612946 CNTNAP3BQ96NU0 1288 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 ZYG11BQ9C0D3 744 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 TTYH3Q9C0H2 523 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 ERVW-1Q9UQF0 538 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 CDK5RAP2Q96SN8 1893 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 CDK2P24941 298 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 HNRNPDQ14103 355 aaKnown RBP8.62□□□□□ -1.03
TTC28-208ENST00000612946 ARL13AQ5H913 290 aaPredicted RBP8.62□□□□□ -1.03
TTC28-208ENST00000612946 SLC35F1Q5T1Q4 408 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 ZNF280BQ86YH2 543 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 GID4Q8IVV7 300 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 TMEM86AQ8N2M4 240 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 PNLDC1Q8NA58 520 aaKnown RBP8.62□□□□□ -1.03
TTC28-208ENST00000612946 NELFAQ9H3P2 528 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 RUVBL1Q9Y265 456 aaKnown RBP8.62□□□□□ -1.03
TTC28-208ENST00000612946 SLIT3O75094 1523 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 GRXCR2A6NFK2 248 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 TCAF2A6NFQ2 919 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 BMP2P12643 396 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 DLSTP36957 453 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 APOBEC3FQ8IUX4 373 aaKnown RBP8.62□□□□□ -1.03
TTC28-208ENST00000612946 DENND1CQ8IV53 801 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 POC1BQ8TC44 478 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 REEP4Q9H6H4 257 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 STARD7Q9NQZ5 370 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 PNO1Q9NRX1 252 aaKnown RBP8.62□□□□□ -1.03
TTC28-208ENST00000612946 NID2Q14112 1375 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 C19orf81C9J6K1 198 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 PMM2O15305 246 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 ADAM12O43184 909 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 TLL1O43897 1013 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 ACTBP60709 375 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 ACTG1P63261 375 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 TLE3Q04726 772 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 CERCAMQ5T4B2 595 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 RETSATQ6NUM9 610 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 METAP1DQ6UB28 335 aaPredicted RBP8.62□□□□□ -1.03
TTC28-208ENST00000612946 FAM196AQ6ZSG2 479 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 DET1Q7L5Y6 550 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 ACSF2Q96CM8 615 aaPredicted RBP8.62□□□□□ -1.03
TTC28-208ENST00000612946 TCF25Q9BQ70 676 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 TTYH2Q9BSA4 534 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 ENPP5Q9UJA9 477 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 PACSIN3Q9UKS6 424 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 PPIEQ9UNP9 301 aaKnown RBP8.62□□□□□ -1.03
TTC28-208ENST00000612946 IFT172Q9UG01 1749 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 ZFC3H1O60293 1989 aaKnown RBP8.62□□□□□ -1.03
TTC28-208ENST00000612946 GXYLT2A0PJZ3 443 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 MT-CO1P00395 513 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 LINC00032P0C843 101 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 CDK4P11802 303 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 TYRP14679 529 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 CLK3P49761 638 aaKnown RBP8.62□□□□□ -1.03
TTC28-208ENST00000612946 KHKP50053 298 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 TAPT1Q6NXT6 567 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 TIFABQ6ZNK6 161 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 SAMD14Q8IZD0 417 aaPredicted RBP8.62□□□□□ -1.03
TTC28-208ENST00000612946 RNF32Q9H0A6 362 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 RPF2Q9H7B2 306 aaKnown RBP8.62□□□□□ -1.03
TTC28-208ENST00000612946 ZDHHC18Q9NUE0 388 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 PIN4Q9Y237 131 aaKnown RBP8.62□□□□□ -1.03
TTC28-208ENST00000612946 SPIN1Q9Y657 262 aaPredicted RBP8.62□□□□□ -1.03
TTC28-208ENST00000612946 ADAMTS13Q76LX8 1427 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 OR1I1O60431 355 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 MT-ND2P03891 347 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 XKP51811 444 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 BLOC1S1P78537 153 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 COTL1Q14019 142 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 SIM2Q14190 667 aaPredicted RBP8.62□□□□□ -1.03
TTC28-208ENST00000612946 PET117Q6UWS5 81 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 DGLUCYQ7Z3D6 616 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 ARL14Q8N4G2 192 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 MFSD8Q8NHS3 518 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 CIB4A0PJX0 185 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 LCMT2O60294 686 aaKnown RBP8.62□□□□□ -1.03
TTC28-208ENST00000612946 AP2A1O95782 977 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 CACNB2Q08289 660 aaPredicted RBP8.62□□□□□ -1.03
TTC28-208ENST00000612946 GRM3Q14832 879 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 CLVS2Q5SYC1 327 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 ISLR2Q6UXK2 745 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 WNT8BQ93098 351 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 RIOX1Q9H6W3 641 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 KCNQ5Q9NR82 932 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 FBXO5Q9UKT4 447 aa8.62□□□□□ -1.03
TTC28-208ENST00000612946 PARP4Q9UKK3 1724 aaKnown RBP8.62□□□□□ -1.03
TTC28-208ENST00000612946 ICAM1P05362 532 aa8.61□□□□□ -1.03
TTC28-208ENST00000612946 CHRNB2P17787 502 aa8.61□□□□□ -1.03
TTC28-208ENST00000612946 SERPINA4P29622 427 aa8.61□□□□□ -1.03
TTC28-208ENST00000612946 ARSFP54793 590 aa8.61□□□□□ -1.03
TTC28-208ENST00000612946 FASTKD3Q14CZ7 662 aaKnown RBP8.61□□□□□ -1.03
TTC28-208ENST00000612946 CDNFQ49AH0 187 aa8.61□□□□□ -1.03
TTC28-208ENST00000612946 HGSNATQ68CP4 663 aa8.61□□□□□ -1.03
TTC28-208ENST00000612946 APTXQ7Z2E3 356 aaKnown RBP8.61□□□□□ -1.03
TTC28-208ENST00000612946 FAM98AQ8NCA5 519 aaKnown RBP8.61□□□□□ -1.03
TTC28-208ENST00000612946 CEP41Q9BYV8 373 aa8.61□□□□□ -1.03
TTC28-208ENST00000612946 ZNF705EA8MWA4 302 aaPredicted RBP8.61□□□□□ -1.03
TTC28-208ENST00000612946 XKRYO14609 159 aa8.61□□□□□ -1.03
TTC28-208ENST00000612946 GJA1P17302 382 aa8.61□□□□□ -1.03
TTC28-208ENST00000612946 MAOAP21397 527 aa8.61□□□□□ -1.03
TTC28-208ENST00000612946 DPP6P42658 865 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms