RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 KDM1AO60341 852 aa23.06■■□□□ 1.28
LSM4-202ENST00000593564 SEMA7AO75326 666 aa23.06■■□□□ 1.28
LSM4-202ENST00000593564 IGHEP01854 428 aa23.06■■□□□ 1.28
LSM4-202ENST00000593564 OR56A5P0C7T3 313 aa23.06■■□□□ 1.28
LSM4-202ENST00000593564 FOLR3P41439 243 aa23.06■■□□□ 1.28
LSM4-202ENST00000593564 SLC5A12Q1EHB4 618 aa23.06■■□□□ 1.28
LSM4-202ENST00000593564 CCDC38Q502W7 563 aa23.06■■□□□ 1.28
LSM4-202ENST00000593564 DCAF10Q5QP82 559 aa23.06■■□□□ 1.28
LSM4-202ENST00000593564 LYPLAL1Q5VWZ2 237 aa23.06■■□□□ 1.28
LSM4-202ENST00000593564 DNAJC22Q8N4W6 341 aa23.06■■□□□ 1.28
LSM4-202ENST00000593564 OR2Y1Q8NGV0 311 aa23.06■■□□□ 1.28
LSM4-202ENST00000593564 IFT80Q9P2H3 777 aaPredicted RBP23.06■■□□□ 1.28
LSM4-202ENST00000593564 NDOR1Q9UHB4 597 aa23.06■■□□□ 1.28
LSM4-202ENST00000593564 ERI2A8K979 691 aaKnown RBP23.05■■□□□ 1.28
LSM4-202ENST00000593564 CTSBP07858 339 aa23.05■■□□□ 1.28
LSM4-202ENST00000593564 KIR2DS3Q14952 304 aa23.05■■□□□ 1.28
LSM4-202ENST00000593564 KYNUQ16719 465 aa23.05■■□□□ 1.28
LSM4-202ENST00000593564 NAPRTQ6XQN6 538 aa23.05■■□□□ 1.28
LSM4-202ENST00000593564 SYCE1Q8N0S2 351 aa23.05■■□□□ 1.28
LSM4-202ENST00000593564 TAB3Q8N5C8 712 aaPredicted RBP23.05■■□□□ 1.28
LSM4-202ENST00000593564 ZNF655Q8N720 491 aaPredicted RBP23.05■■□□□ 1.28
LSM4-202ENST00000593564 CLEC1AQ8NC01 280 aa23.05■■□□□ 1.28
LSM4-202ENST00000593564 OR52K1Q8NGK4 314 aa23.05■■□□□ 1.28
LSM4-202ENST00000593564 OR13J1Q8NGT2 312 aa23.05■■□□□ 1.28
LSM4-202ENST00000593564 MRFAP1L1Q96HT8 127 aa23.05■■□□□ 1.28
LSM4-202ENST00000593564 TXLNGQ9NUQ3 528 aa23.05■■□□□ 1.28
LSM4-202ENST00000593564 DHCR7Q9UBM7 475 aaKnown RBP23.05■■□□□ 1.28
LSM4-202ENST00000593564 PLAGL1Q9UM63 463 aa23.05■■□□□ 1.28
LSM4-202ENST00000593564 PACSIN2Q9UNF0 486 aaPredicted RBP23.05■■□□□ 1.28
LSM4-202ENST00000593564 PLCL2Q9UPR0 1127 aa23.05■■□□□ 1.28
LSM4-202ENST00000593564 HIVEP3Q5T1R4 2406 aa23.04■■□□□ 1.28
LSM4-202ENST00000593564 ISM1B1AKI9 464 aa23.04■■□□□ 1.28
LSM4-202ENST00000593564 F8W8V4 182 aa23.04■■□□□ 1.28
LSM4-202ENST00000593564 PEX12O00623 359 aa23.04■■□□□ 1.28
LSM4-202ENST00000593564 OR1I1O60431 355 aa23.04■■□□□ 1.28
LSM4-202ENST00000593564 KLHL41O60662 606 aa23.04■■□□□ 1.28
LSM4-202ENST00000593564 PEBP1P30086 187 aaKnown RBP23.04■■□□□ 1.28
LSM4-202ENST00000593564 ZNF75DP51815 510 aa23.04■■□□□ 1.28
LSM4-202ENST00000593564 CDH17Q12864 832 aa23.04■■□□□ 1.28
LSM4-202ENST00000593564 MRPL49Q13405 166 aaKnown RBP23.04■■□□□ 1.28
LSM4-202ENST00000593564 MYBPC3Q14896 1274 aa23.04■■□□□ 1.28
LSM4-202ENST00000593564 NKAIN1Q4KMZ8 207 aa23.04■■□□□ 1.28
LSM4-202ENST00000593564 DNAJC21Q5F1R6 531 aaKnown RBP23.04■■□□□ 1.28
LSM4-202ENST00000593564 MRPL14Q6P1L8 145 aaKnown RBP23.04■■□□□ 1.28
LSM4-202ENST00000593564 AFTPHQ6ULP2 937 aa23.04■■□□□ 1.28
LSM4-202ENST00000593564 GALNT16Q8N428 558 aa23.04■■□□□ 1.28
LSM4-202ENST00000593564 PTERQ96BW5 349 aa23.04■■□□□ 1.28
LSM4-202ENST00000593564 TTC1Q99614 292 aa23.04■■□□□ 1.28
LSM4-202ENST00000593564 RIMKLBQ9ULI2 386 aa23.04■■□□□ 1.28
LSM4-202ENST00000593564 CDYLQ9Y232 598 aa23.04■■□□□ 1.28
LSM4-202ENST00000593564 TCRBV7S2A1N4TA0A589 114 aa23.03■■□□□ 1.28
LSM4-202ENST00000593564 HEATR9A2RTY3 570 aa23.03■■□□□ 1.28
LSM4-202ENST00000593564 CNOT3O75175 753 aaKnown RBP23.03■■□□□ 1.28
LSM4-202ENST00000593564 ALPPP05187 535 aa23.03■■□□□ 1.28
LSM4-202ENST00000593564 PKLRP30613 574 aa23.03■■□□□ 1.28
LSM4-202ENST00000593564 PLEKHN1Q494U1 663 aaPredicted RBP23.03■■□□□ 1.28
LSM4-202ENST00000593564 HIST2H2BCQ6DN03 193 aa23.03■■□□□ 1.28
LSM4-202ENST00000593564 IGFL3Q6UXB1 125 aa23.03■■□□□ 1.28
LSM4-202ENST00000593564 KIAA1328Q86T90 577 aa23.03■■□□□ 1.28
LSM4-202ENST00000593564 SLC22A15Q8IZD6 547 aa23.03■■□□□ 1.28
LSM4-202ENST00000593564 IQCKQ8N0W5 287 aa23.03■■□□□ 1.28
LSM4-202ENST00000593564 DNAAF3Q8N9W5 541 aa23.03■■□□□ 1.28
LSM4-202ENST00000593564 HDAC10Q969S8 669 aa23.03■■□□□ 1.28
LSM4-202ENST00000593564 NDC1Q9BTX1 674 aa23.03■■□□□ 1.28
LSM4-202ENST00000593564 IRAK4Q9NWZ3 460 aa23.03■■□□□ 1.28
LSM4-202ENST00000593564 P4HTMQ9NXG6 502 aa23.03■■□□□ 1.28
LSM4-202ENST00000593564 MAP10Q9P2G4 905 aa23.03■■□□□ 1.28
LSM4-202ENST00000593564 IMPACTQ9P2X3 320 aa23.03■■□□□ 1.28
LSM4-202ENST00000593564 B3GNT3Q9Y2A9 372 aa23.03■■□□□ 1.28
LSM4-202ENST00000593564 SUN1O94901 812 aa23.02■■□□□ 1.28
LSM4-202ENST00000593564 DDAH2O95865 285 aa23.02■■□□□ 1.28
LSM4-202ENST00000593564 FTCDO95954 541 aa23.02■■□□□ 1.28
LSM4-202ENST00000593564 GAS8O95995 478 aa23.02■■□□□ 1.28
LSM4-202ENST00000593564 GOT2P00505 430 aaKnown RBP23.02■■□□□ 1.28
LSM4-202ENST00000593564 RNF224P0DH78 156 aa23.02■■□□□ 1.28
LSM4-202ENST00000593564 RAB28P51157 221 aa23.02■■□□□ 1.28
LSM4-202ENST00000593564 EIF2S3LQ2VIR3 472 aaKnown RBP23.02■■□□□ 1.28
LSM4-202ENST00000593564 TSTD2Q5T7W7 516 aa23.02■■□□□ 1.28
LSM4-202ENST00000593564 PPP1R32Q7Z5V6 425 aa23.02■■□□□ 1.28
LSM4-202ENST00000593564 SNRNP40Q96DI7 357 aaKnown RBP23.02■■□□□ 1.28
LSM4-202ENST00000593564 C19orf60Q96EN9 201 aa23.02■■□□□ 1.28
LSM4-202ENST00000593564 RANBP9Q96S59 729 aa23.02■■□□□ 1.28
LSM4-202ENST00000593564 ZNF552Q9H707 407 aaPredicted RBP23.02■■□□□ 1.28
LSM4-202ENST00000593564 CASS4Q9NQ75 786 aa23.02■■□□□ 1.28
LSM4-202ENST00000593564 EURLQ9NYK6 297 aa23.02■■□□□ 1.28
LSM4-202ENST00000593564 SLC2A6Q9UGQ3 507 aa23.02■■□□□ 1.28
LSM4-202ENST00000593564 DOPEY1Q5JWR5 2465 aa23.02■■□□□ 1.28
LSM4-202ENST00000593564 UMODP07911 640 aa23.01■■□□□ 1.27
LSM4-202ENST00000593564 STIP1P31948 543 aaKnown RBP23.01■■□□□ 1.27
LSM4-202ENST00000593564 GCGRP47871 477 aa23.01■■□□□ 1.27
LSM4-202ENST00000593564 SOX8P57073 446 aa23.01■■□□□ 1.27
LSM4-202ENST00000593564 ACVR1Q04771 509 aa23.01■■□□□ 1.27
LSM4-202ENST00000593564 SLC9A5Q14940 896 aa23.01■■□□□ 1.27
LSM4-202ENST00000593564 MENTQ9BUN1 341 aa23.01■■□□□ 1.27
LSM4-202ENST00000593564 ETNK1Q9HBU6 452 aa23.01■■□□□ 1.27
LSM4-202ENST00000593564 KRT86O43790 486 aa23■■□□□ 1.27
LSM4-202ENST00000593564 GPC4O75487 556 aa23■■□□□ 1.27
LSM4-202ENST00000593564 IPO13O94829 963 aaKnown RBP23■■□□□ 1.27
LSM4-202ENST00000593564 ATXN8OSP0DMR3 200 aa23■■□□□ 1.27
LSM4-202ENST00000593564 MAGP20916 626 aa23■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms