RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 MRPL14Q6P1L8 145 aaKnown RBP20.31■□□□□ 0.84
VPS53-216ENST00000574029 GALNT16Q8N428 558 aa20.31■□□□□ 0.84
VPS53-216ENST00000574029 ZNF655Q8N720 491 aaPredicted RBP20.31■□□□□ 0.84
VPS53-216ENST00000574029 FAM71DQ8N9W8 422 aa20.31■□□□□ 0.84
VPS53-216ENST00000574029 PTERQ96BW5 349 aa20.31■□□□□ 0.84
VPS53-216ENST00000574029 ZNF552Q9H707 407 aaPredicted RBP20.31■□□□□ 0.84
VPS53-216ENST00000574029 ASF1BQ9NVP2 202 aa20.31■□□□□ 0.84
VPS53-216ENST00000574029 P4HTMQ9NXG6 502 aa20.31■□□□□ 0.84
VPS53-216ENST00000574029 NDOR1Q9UHB4 597 aa20.31■□□□□ 0.84
VPS53-216ENST00000574029 SRPK3Q9UPE1 567 aa20.31■□□□□ 0.84
VPS53-216ENST00000574029 CDYLQ9Y232 598 aa20.31■□□□□ 0.84
VPS53-216ENST00000574029 TDRKHQ9Y2W6 561 aaKnown RBP20.31■□□□□ 0.84
VPS53-216ENST00000574029 EPN1Q9Y6I3 576 aaPredicted RBP20.31■□□□□ 0.84
VPS53-216ENST00000574029 PCM1Q15154 2024 aa20.31■□□□□ 0.84
VPS53-216ENST00000574029 A1L4Q6 167 aa20.3■□□□□ 0.84
VPS53-216ENST00000574029 ALPPP05187 535 aa20.3■□□□□ 0.84
VPS53-216ENST00000574029 PEBP1P30086 187 aaKnown RBP20.3■□□□□ 0.84
VPS53-216ENST00000574029 FOXN2P32314 431 aa20.3■□□□□ 0.84
VPS53-216ENST00000574029 NR6A1Q15406 480 aa20.3■□□□□ 0.84
VPS53-216ENST00000574029 P3H1Q32P28 736 aa20.3■□□□□ 0.84
VPS53-216ENST00000574029 NKAIN1Q4KMZ8 207 aa20.3■□□□□ 0.84
VPS53-216ENST00000574029 CRB2Q5IJ48 1285 aa20.3■□□□□ 0.84
VPS53-216ENST00000574029 PPP1R32Q7Z5V6 425 aa20.3■□□□□ 0.84
VPS53-216ENST00000574029 LRRC57Q8N9N7 239 aa20.3■□□□□ 0.84
VPS53-216ENST00000574029 TTC13Q8NBP0 860 aa20.3■□□□□ 0.84
VPS53-216ENST00000574029 ALS2CR12Q96Q35 445 aa20.3■□□□□ 0.84
VPS53-216ENST00000574029 TXLNGQ9NUQ3 528 aa20.3■□□□□ 0.84
VPS53-216ENST00000574029 PIH1D1Q9NWS0 290 aaKnown RBP20.3■□□□□ 0.84
VPS53-216ENST00000574029 PLCL2Q9UPR0 1127 aa20.3■□□□□ 0.84
VPS53-216ENST00000574029 TEX15Q9BXT5 2789 aa20.3■□□□□ 0.84
VPS53-216ENST00000574029 SNRNP200O75643 2136 aaKnown RBP20.3■□□□□ 0.84
VPS53-216ENST00000574029 OR51F1A6NGY5 319 aa20.29■□□□□ 0.84
VPS53-216ENST00000574029 PSMD3O43242 534 aa20.29■□□□□ 0.84
VPS53-216ENST00000574029 UMODP07911 640 aa20.29■□□□□ 0.84
VPS53-216ENST00000574029 NAP1L1P55209 391 aaKnown RBP20.29■□□□□ 0.84
VPS53-216ENST00000574029 KIR2DS3Q14952 304 aa20.29■□□□□ 0.84
VPS53-216ENST00000574029 LYPLAL1Q5VWZ2 237 aa20.29■□□□□ 0.84
VPS53-216ENST00000574029 NAPRTQ6XQN6 538 aa20.29■□□□□ 0.84
VPS53-216ENST00000574029 CISD2Q8N5K1 135 aaKnown RBP20.29■□□□□ 0.84
VPS53-216ENST00000574029 ERRFI1Q9UJM3 462 aaPredicted RBP20.29■□□□□ 0.84
VPS53-216ENST00000574029 PLAGL1Q9UM63 463 aa20.29■□□□□ 0.84
VPS53-216ENST00000574029 REXO2Q9Y3B8 237 aaKnown RBP20.29■□□□□ 0.84
VPS53-216ENST00000574029 CCDC78A2IDD5 438 aa20.28■□□□□ 0.84
VPS53-216ENST00000574029 CCDC162PA2VCL2 907 aa20.28■□□□□ 0.84
VPS53-216ENST00000574029 GRID2IPA4D2P6 1211 aa20.28■□□□□ 0.84
VPS53-216ENST00000574029 GOLGA6L9A6NEM1 432 aa20.28■□□□□ 0.84
VPS53-216ENST00000574029 SOWAHDA6NJG2 315 aa20.28■□□□□ 0.84
VPS53-216ENST00000574029 ISM1B1AKI9 464 aa20.28■□□□□ 0.84
VPS53-216ENST00000574029 KDM1AO60341 852 aa20.28■□□□□ 0.84
VPS53-216ENST00000574029 IPO13O94829 963 aaKnown RBP20.28■□□□□ 0.84
VPS53-216ENST00000574029 OR56A5P0C7T3 313 aa20.28■□□□□ 0.84
VPS53-216ENST00000574029 GCGRP47871 477 aa20.28■□□□□ 0.84
VPS53-216ENST00000574029 GDF10P55107 478 aa20.28■□□□□ 0.84
VPS53-216ENST00000574029 FOXL2P58012 376 aa20.28■□□□□ 0.84
VPS53-216ENST00000574029 SLC9A5Q14940 896 aa20.28■□□□□ 0.84
VPS53-216ENST00000574029 SYTL3Q4VX76 610 aa20.28■□□□□ 0.84
VPS53-216ENST00000574029 TMEM151BQ8IW70 566 aa20.28■□□□□ 0.84
VPS53-216ENST00000574029 INPP5DQ92835 1189 aa20.28■□□□□ 0.84
VPS53-216ENST00000574029 BARD1Q99728 777 aaKnown RBP20.28■□□□□ 0.84
VPS53-216ENST00000574029 NDC1Q9BTX1 674 aa20.28■□□□□ 0.84
VPS53-216ENST00000574029 SLC22A11Q9NSA0 550 aa20.28■□□□□ 0.84
VPS53-216ENST00000574029 RP1L1Q8IWN7 2480 aaPredicted RBP20.28■□□□□ 0.84
VPS53-216ENST00000574029 ANKRD12Q6UB98 2062 aa20.27■□□□□ 0.84
VPS53-216ENST00000574029 MASP2O00187 686 aa20.27■□□□□ 0.84
VPS53-216ENST00000574029 LDLRP01130 860 aa20.27■□□□□ 0.84
VPS53-216ENST00000574029 ATXN8OSP0DMR3 200 aa20.27■□□□□ 0.84
VPS53-216ENST00000574029 KLF1Q13351 362 aaPredicted RBP20.27■□□□□ 0.84
VPS53-216ENST00000574029 Q6ZS92 163 aa20.27■□□□□ 0.84
VPS53-216ENST00000574029 MAMDC2Q7Z304 686 aaPredicted RBP20.27■□□□□ 0.84
VPS53-216ENST00000574029 LINC00523Q86TU6 105 aa20.27■□□□□ 0.84
VPS53-216ENST00000574029 OR13J1Q8NGT2 312 aa20.27■□□□□ 0.84
VPS53-216ENST00000574029 SLC35B2Q8TB61 432 aa20.27■□□□□ 0.84
VPS53-216ENST00000574029 TM9SF4Q92544 642 aa20.27■□□□□ 0.84
VPS53-216ENST00000574029 NACC2Q96BF6 587 aa20.27■□□□□ 0.84
VPS53-216ENST00000574029 PANX2Q96RD6 677 aa20.27■□□□□ 0.84
VPS53-216ENST00000574029 LACRTQ9GZZ8 138 aa20.27■□□□□ 0.84
VPS53-216ENST00000574029 ILKAPQ9H0C8 392 aaPredicted RBP20.27■□□□□ 0.84
VPS53-216ENST00000574029 ATP13A2Q9NQ11 1180 aa20.27■□□□□ 0.84
VPS53-216ENST00000574029 IRAK4Q9NWZ3 460 aa20.27■□□□□ 0.84
VPS53-216ENST00000574029 EURLQ9NYK6 297 aa20.27■□□□□ 0.84
VPS53-216ENST00000574029 HIVEP3Q5T1R4 2406 aa20.27■□□□□ 0.84
VPS53-216ENST00000574029 AGPSO00116 658 aa20.26■□□□□ 0.83
VPS53-216ENST00000574029 OR1I1O60431 355 aa20.26■□□□□ 0.83
VPS53-216ENST00000574029 CLDN1O95832 211 aa20.26■□□□□ 0.83
VPS53-216ENST00000574029 ONECUT2O95948 504 aa20.26■□□□□ 0.83
VPS53-216ENST00000574029 PKLRP30613 574 aa20.26■□□□□ 0.83
VPS53-216ENST00000574029 RAB28P51157 221 aa20.26■□□□□ 0.83
VPS53-216ENST00000574029 CYP2A13Q16696 494 aa20.26■□□□□ 0.83
VPS53-216ENST00000574029 CCDC38Q502W7 563 aa20.26■□□□□ 0.83
VPS53-216ENST00000574029 DNAJC21Q5F1R6 531 aaKnown RBP20.26■□□□□ 0.83
VPS53-216ENST00000574029 SLC22A15Q8IZD6 547 aa20.26■□□□□ 0.83
VPS53-216ENST00000574029 ZADH2Q8N4Q0 377 aa20.26■□□□□ 0.83
VPS53-216ENST00000574029 DLG3Q92796 817 aa20.26■□□□□ 0.83
VPS53-216ENST00000574029 RANBP9Q96S59 729 aa20.26■□□□□ 0.83
VPS53-216ENST00000574029 TMEM121Q9BTD3 319 aa20.26■□□□□ 0.83
VPS53-216ENST00000574029 MENTQ9BUN1 341 aa20.26■□□□□ 0.83
VPS53-216ENST00000574029 ZBTB20Q9HC78 741 aaPredicted RBP20.26■□□□□ 0.83
VPS53-216ENST00000574029 IMPACTQ9P2X3 320 aa20.26■□□□□ 0.83
VPS53-216ENST00000574029 R3HDM2Q9Y2K5 976 aaKnown RBP20.26■□□□□ 0.83
VPS53-216ENST00000574029 PCDHGA10Q9Y5H3 936 aa20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms