RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 TAF2Q6P1X5 1199 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 WDR73Q6P4I2 378 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 ZNF530Q6P9A1 599 aaPredicted RBP3.2□□□□□ -1.9
VPS35-208ENST00000568612 TMEM65Q6PI78 240 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 XKRXQ6PP77 449 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 LAYNQ6UX15 382 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 MSANTD1Q6ZTZ1 278 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 ZNF767PQ75MW2 155 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 RD3Q7Z3Z2 195 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 KDELC2Q7Z4H8 507 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 GALNTL5Q7Z4T8 443 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 NEK8Q86SG6 692 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 CROCCP2Q86T23 111 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 LHFPL3Q86UP9 236 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 GPR180Q86V85 440 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 GPBP1Q86WP2 473 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 VSIG1Q86XK7 387 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 ADGRG3Q86Y34 549 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 HIPK1Q86Z02 1210 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 TBC1D10CQ8IV04 446 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 CNGA4Q8IV77 575 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 HERC6Q8IVU3 1022 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 MPP5Q8N3R9 675 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 PCDH20Q8N6Y1 951 aaKnown RBP3.2□□□□□ -1.9
VPS35-208ENST00000568612 ZNF321PQ8N8H1 164 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 SNX31Q8N9S9 440 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 SLC37A3Q8NCC5 494 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 TRPV1Q8NER1 839 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 OR52H1Q8NGJ2 320 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 ZNF420Q8TAQ5 688 aaPredicted RBP3.2□□□□□ -1.9
VPS35-208ENST00000568612 URGCPQ8TCY9 931 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 KCNG4Q8TDN1 519 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 U2AF1L4Q8WU68 220 aaKnown RBP3.2□□□□□ -1.9
VPS35-208ENST00000568612 FAM216AQ8WUB2 273 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 FAM172AQ8WUF8 416 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 SLC13A3Q8WWT9 602 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 FIG4Q92562 907 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 SYN2Q92777 582 aaPredicted RBP3.2□□□□□ -1.9
VPS35-208ENST00000568612 MAGOHBQ96A72 148 aaKnown RBP3.2□□□□□ -1.9
VPS35-208ENST00000568612 NTAN1Q96AB6 310 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 FUBP1Q96AE4 644 aaKnown RBP3.2□□□□□ -1.9
VPS35-208ENST00000568612 C18orf8Q96DM3 657 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 PAGE5Q96GU1 130 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 MAGED4Q96JG8 741 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 ZNF668Q96K58 619 aaPredicted RBP3.2□□□□□ -1.9
VPS35-208ENST00000568612 NSMCE2Q96MF7 247 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 RIPOR3Q96MK2 946 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 SERPINB11Q96P15 392 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 QRFPRQ96P65 431 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 ASB2Q96Q27 587 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 EYA3Q99504 573 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 CGRRF1Q99675 332 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 BARD1Q99728 777 aaKnown RBP3.2□□□□□ -1.9
VPS35-208ENST00000568612 ZNF251Q9BRH9 671 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 TBCDQ9BTW9 1192 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 TRAF4Q9BUZ4 470 aaPredicted RBP3.2□□□□□ -1.9
VPS35-208ENST00000568612 ZNF518BQ9C0D4 1074 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 PPA2Q9H2U2 334 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 GOLPH3Q9H4A6 298 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 SMYD3Q9H7B4 428 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 TDRD3Q9H7E2 651 aaKnown RBP3.2□□□□□ -1.9
VPS35-208ENST00000568612 SYNPO2LQ9H987 977 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 UGT1A7Q9HAW7 530 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 UGT1A10Q9HAW8 530 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 UGT1A8Q9HAW9 530 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 MRPS30Q9NP92 439 aaKnown RBP3.2□□□□□ -1.9
VPS35-208ENST00000568612 IFT46Q9NQC8 304 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 DDX4Q9NQI0 724 aaKnown RBP3.2□□□□□ -1.9
VPS35-208ENST00000568612 SAR1AQ9NR31 198 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 KLHL1Q9NR64 748 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 IL17RBQ9NRM6 502 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 DNAJC17Q9NVM6 304 aaKnown RBP3.2□□□□□ -1.9
VPS35-208ENST00000568612 GDE1Q9NZC3 331 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 PKD2L2Q9NZM6 624 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 KCND2Q9NZV8 630 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 CAMSAP3Q9P1Y5 1249 aaPredicted RBP3.2□□□□□ -1.9
VPS35-208ENST00000568612 PTGFRNQ9P2B2 879 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 DNMT3BQ9UBC3 853 aaKnown RBP3.2□□□□□ -1.9
VPS35-208ENST00000568612 AFF4Q9UHB7 1163 aaKnown RBP3.2□□□□□ -1.9
VPS35-208ENST00000568612 ZDHHC8Q9ULC8 765 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 NOB1Q9ULX3 412 aaKnown RBP3.2□□□□□ -1.9
VPS35-208ENST00000568612 PCDHA7Q9UN72 937 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 KCNE2Q9Y6J6 123 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 ZHX2Q9Y6X8 837 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 SCN4AP35499 1836 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 MYH3P11055 1940 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 BCL9LQ86UU0 1499 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 KIF1AQ12756 1690 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 EMSYQ7Z589 1322 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 TOPBP1Q92547 1522 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 SYCP2Q9BX26 1530 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 A0A0X1KG70 313 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 TTC26A0AVF1 554 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 FAM92AA1XBS5 289 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 PRSS29PA6NIE9 313 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 ZNF879B4DU55 563 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 TCP11X1B4DZS4 312 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 E7ENX8 843 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 LOC110117498-PIK3R3F6TDL0 507 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 H7C0S8 307 aa3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms