RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 TMF1P82094 1093 aa2.45□□□□□ -2.02
VPS35-207ENST00000568191 CDK3Q00526 305 aa2.45□□□□□ -2.02
VPS35-207ENST00000568191 DMPKQ09013 629 aa2.45□□□□□ -2.02
VPS35-207ENST00000568191 TCTEX1D4Q5JR98 221 aa2.45□□□□□ -2.02
VPS35-207ENST00000568191 FAAH2Q6GMR7 532 aa2.45□□□□□ -2.02
VPS35-207ENST00000568191 CCDC70Q6NSX1 233 aa2.45□□□□□ -2.02
VPS35-207ENST00000568191 G2E3Q7L622 706 aa2.45□□□□□ -2.02
VPS35-207ENST00000568191 HAUS6Q7Z4H7 955 aa2.45□□□□□ -2.02
VPS35-207ENST00000568191 MAATS1Q7Z4T9 603 aa2.45□□□□□ -2.02
VPS35-207ENST00000568191 FAM114A1Q8IWE2 563 aa2.45□□□□□ -2.02
VPS35-207ENST00000568191 SLC39A11Q8N1S5 342 aa2.45□□□□□ -2.02
VPS35-207ENST00000568191 TRIML1Q8N9V2 468 aa2.45□□□□□ -2.02
VPS35-207ENST00000568191 MCUQ8NE86 351 aa2.45□□□□□ -2.02
VPS35-207ENST00000568191 NUP37Q8NFH4 326 aa2.45□□□□□ -2.02
VPS35-207ENST00000568191 VANGL1Q8TAA9 524 aaPredicted RBP2.45□□□□□ -2.02
VPS35-207ENST00000568191 ZNF519Q8TB69 540 aa2.45□□□□□ -2.02
VPS35-207ENST00000568191 IRGQQ8WZA9 623 aa2.45□□□□□ -2.02
VPS35-207ENST00000568191 LRRC59Q96AG4 307 aaKnown RBP2.45□□□□□ -2.02
VPS35-207ENST00000568191 GAL3ST4Q96RP7 486 aa2.45□□□□□ -2.02
VPS35-207ENST00000568191 NKX3-1Q99801 234 aaPredicted RBP2.45□□□□□ -2.02
VPS35-207ENST00000568191 RAB11FIP5Q9BXF6 653 aa2.45□□□□□ -2.02
VPS35-207ENST00000568191 MAK16Q9BXY0 300 aaKnown RBP2.45□□□□□ -2.02
VPS35-207ENST00000568191 SPATC1LQ9H0A9 340 aa2.45□□□□□ -2.02
VPS35-207ENST00000568191 S1PR5Q9H228 398 aa2.45□□□□□ -2.02
VPS35-207ENST00000568191 ARRDC1-AS1Q9H2J1 176 aa2.45□□□□□ -2.02
VPS35-207ENST00000568191 KCNK15Q9H427 330 aa2.45□□□□□ -2.02
VPS35-207ENST00000568191 OSGEPL1Q9H4B0 414 aa2.45□□□□□ -2.02
VPS35-207ENST00000568191 ATP13A3Q9H7F0 1226 aa2.45□□□□□ -2.02
VPS35-207ENST00000568191 SPHK2Q9NRA0 654 aa2.45□□□□□ -2.02
VPS35-207ENST00000568191 PSD3Q9NYI0 1048 aa2.45□□□□□ -2.02
VPS35-207ENST00000568191 TAB2Q9NYJ8 693 aa2.45□□□□□ -2.02
VPS35-207ENST00000568191 LARSQ9P2J5 1176 aaKnown RBP2.45□□□□□ -2.02
VPS35-207ENST00000568191 THEGQ9P2T0 379 aa2.45□□□□□ -2.02
VPS35-207ENST00000568191 TUBE1Q9UJT0 475 aa2.45□□□□□ -2.02
VPS35-207ENST00000568191 RARRES3Q9UL19 164 aa2.45□□□□□ -2.02
VPS35-207ENST00000568191 SOS1Q07889 1333 aaPredicted RBP2.44□□□□□ -2.02
VPS35-207ENST00000568191 A0A087X0M5 115 aa2.44□□□□□ -2.02
VPS35-207ENST00000568191 A0A1B0GX30 115 aa2.44□□□□□ -2.02
VPS35-207ENST00000568191 ASB14A6NK59 587 aa2.44□□□□□ -2.02
VPS35-207ENST00000568191 B4DLN1 442 aa2.44□□□□□ -2.02
VPS35-207ENST00000568191 ZNF195O14628 629 aa2.44□□□□□ -2.02
VPS35-207ENST00000568191 XRCC3O43542 346 aa2.44□□□□□ -2.02
VPS35-207ENST00000568191 IDH3BO43837 385 aa2.44□□□□□ -2.02
VPS35-207ENST00000568191 GLRA3O75311 464 aa2.44□□□□□ -2.02
VPS35-207ENST00000568191 MED24O75448 989 aa2.44□□□□□ -2.02
VPS35-207ENST00000568191 CLDN1O95832 211 aa2.44□□□□□ -2.02
VPS35-207ENST00000568191 IGHV4-31P0DP07 118 aa2.44□□□□□ -2.02
VPS35-207ENST00000568191 MMP9P14780 707 aa2.44□□□□□ -2.02
VPS35-207ENST00000568191 PRKACGP22612 351 aa2.44□□□□□ -2.02
VPS35-207ENST00000568191 TM4SF1P30408 202 aa2.44□□□□□ -2.02
VPS35-207ENST00000568191 NKX2-1P43699 371 aaPredicted RBP2.44□□□□□ -2.02
VPS35-207ENST00000568191 MRPL12P52815 198 aaKnown RBP2.44□□□□□ -2.02
VPS35-207ENST00000568191 GSCP56915 257 aaPredicted RBP2.44□□□□□ -2.02
VPS35-207ENST00000568191 DCAF7P61962 342 aa2.44□□□□□ -2.02
VPS35-207ENST00000568191 ODF4Q2M2E3 257 aa2.44□□□□□ -2.02
VPS35-207ENST00000568191 ELFN2Q5R3F8 820 aa2.44□□□□□ -2.02
VPS35-207ENST00000568191 SLC25A30Q5SVS4 291 aa2.44□□□□□ -2.02
VPS35-207ENST00000568191 DHRS7BQ6IAN0 325 aaPredicted RBP2.44□□□□□ -2.02
VPS35-207ENST00000568191 NOTUMQ6P988 496 aa2.44□□□□□ -2.02
VPS35-207ENST00000568191 NUDT13Q86X67 352 aa2.44□□□□□ -2.02
VPS35-207ENST00000568191 EID3Q8N140 333 aa2.44□□□□□ -2.02
VPS35-207ENST00000568191 AFAP1Q8N556 730 aa2.44□□□□□ -2.02
VPS35-207ENST00000568191 DCLK2Q8N568 766 aa2.44□□□□□ -2.02
VPS35-207ENST00000568191 OR13J1Q8NGT2 312 aa2.44□□□□□ -2.02
VPS35-207ENST00000568191 OLIG1Q8TAK6 271 aa2.44□□□□□ -2.02
VPS35-207ENST00000568191 SMAP2Q8WU79 429 aaPredicted RBP2.44□□□□□ -2.02
VPS35-207ENST00000568191 ZFAND2BQ8WV99 257 aa2.44□□□□□ -2.02
VPS35-207ENST00000568191 HDAC2Q92769 488 aaKnown RBP2.44□□□□□ -2.02
VPS35-207ENST00000568191 AZIN2Q96A70 460 aa2.44□□□□□ -2.02
VPS35-207ENST00000568191 TIGD1Q96MW7 591 aa2.44□□□□□ -2.02
VPS35-207ENST00000568191 FNBP1Q96RU3 617 aa2.44□□□□□ -2.02
VPS35-207ENST00000568191 PSMB7Q99436 277 aa2.44□□□□□ -2.02
VPS35-207ENST00000568191 C16orf70Q9BSU1 422 aa2.44□□□□□ -2.02
VPS35-207ENST00000568191 POLR3GLQ9BT43 218 aa2.44□□□□□ -2.02
VPS35-207ENST00000568191 RPP25Q9BUL9 199 aaKnown RBP2.44□□□□□ -2.02
VPS35-207ENST00000568191 MTMR12Q9C0I1 747 aa2.44□□□□□ -2.02
VPS35-207ENST00000568191 MED20Q9H944 212 aa2.44□□□□□ -2.02
VPS35-207ENST00000568191 SEPT11Q9NVA2 429 aaKnown RBP2.44□□□□□ -2.02
VPS35-207ENST00000568191 ARHGEF38Q9NXL2 777 aa2.44□□□□□ -2.02
VPS35-207ENST00000568191 RHCGQ9UBD6 479 aa2.44□□□□□ -2.02
VPS35-207ENST00000568191 ZNF148Q9UQR1 794 aa2.44□□□□□ -2.02
VPS35-207ENST00000568191 TDRD15B5MCY1 1934 aaKnown RBP2.43□□□□□ -2.02
VPS35-207ENST00000568191 PCNX3Q9H6A9 2034 aa2.43□□□□□ -2.02
VPS35-207ENST00000568191 LOC100509620A0A075B734 347 aa2.43□□□□□ -2.02
VPS35-207ENST00000568191 A0A1W2PR77 199 aa2.43□□□□□ -2.02
VPS35-207ENST00000568191 PTGES3LE9PB15 166 aa2.43□□□□□ -2.02
VPS35-207ENST00000568191 F5H0A9 414 aaPredicted RBP2.43□□□□□ -2.02
VPS35-207ENST00000568191 SOCS3O14543 225 aa2.43□□□□□ -2.02
VPS35-207ENST00000568191 PTP4A3O75365 173 aa2.43□□□□□ -2.02
VPS35-207ENST00000568191 CDK2AP2O75956 126 aa2.43□□□□□ -2.02
VPS35-207ENST00000568191 C22orf31O95567 290 aa2.43□□□□□ -2.02
VPS35-207ENST00000568191 HPRP00739 348 aa2.43□□□□□ -2.02
VPS35-207ENST00000568191 IGHV3-13P01766 116 aa2.43□□□□□ -2.02
VPS35-207ENST00000568191 ZSCAN5DPP0CG00 497 aa2.43□□□□□ -2.02
VPS35-207ENST00000568191 CDH3P22223 829 aa2.43□□□□□ -2.02
VPS35-207ENST00000568191 LHCGRP22888 699 aa2.43□□□□□ -2.02
VPS35-207ENST00000568191 HLA-FP30511 346 aa2.43□□□□□ -2.02
VPS35-207ENST00000568191 MNDAP41218 407 aa2.43□□□□□ -2.02
VPS35-207ENST00000568191 PNRC1Q12796 327 aaPredicted RBP2.43□□□□□ -2.02
VPS35-207ENST00000568191 NFATC2Q13469 925 aa2.43□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms