RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 CETN2P41208 172 aa16.25■□□□□ 0.19
CLN3-211ENST00000564091 CSE1LP55060 971 aaKnown RBP16.25■□□□□ 0.19
CLN3-211ENST00000564091 GDF10P55107 478 aa16.25■□□□□ 0.19
CLN3-211ENST00000564091 ITIH4Q14624 930 aa16.25■□□□□ 0.19
CLN3-211ENST00000564091 MYBPC3Q14896 1274 aa16.25■□□□□ 0.19
CLN3-211ENST00000564091 SKOR2Q2VWA4 1001 aaPredicted RBP16.25■□□□□ 0.19
CLN3-211ENST00000564091 CCDC38Q502W7 563 aa16.25■□□□□ 0.19
CLN3-211ENST00000564091 PPP1R32Q7Z5V6 425 aa16.25■□□□□ 0.19
CLN3-211ENST00000564091 IQCKQ8N0W5 287 aa16.25■□□□□ 0.19
CLN3-211ENST00000564091 DNAJC22Q8N4W6 341 aa16.25■□□□□ 0.19
CLN3-211ENST00000564091 LMNTD1Q8N9Z9 388 aa16.25■□□□□ 0.19
CLN3-211ENST00000564091 OR2Y1Q8NGV0 311 aa16.25■□□□□ 0.19
CLN3-211ENST00000564091 OR5K2Q8NHB8 316 aa16.25■□□□□ 0.19
CLN3-211ENST00000564091 PROKR1Q8TCW9 393 aa16.25■□□□□ 0.19
CLN3-211ENST00000564091 PTERQ96BW5 349 aa16.25■□□□□ 0.19
CLN3-211ENST00000564091 CHRNA10Q9GZZ6 450 aa16.25■□□□□ 0.19
CLN3-211ENST00000564091 LACRTQ9GZZ8 138 aa16.25■□□□□ 0.19
CLN3-211ENST00000564091 ZBTB20Q9HC78 741 aaPredicted RBP16.25■□□□□ 0.19
CLN3-211ENST00000564091 SLC22A11Q9NSA0 550 aa16.25■□□□□ 0.19
CLN3-211ENST00000564091 OR6C2Q9NZP2 312 aa16.25■□□□□ 0.19
CLN3-211ENST00000564091 IMPACTQ9P2X3 320 aa16.25■□□□□ 0.19
CLN3-211ENST00000564091 POLG2Q9UHN1 485 aa16.25■□□□□ 0.19
CLN3-211ENST00000564091 DOPEY1Q5JWR5 2465 aa16.25■□□□□ 0.19
CLN3-211ENST00000564091 CENPEQ02224 2701 aa16.25■□□□□ 0.19
CLN3-211ENST00000564091 CCDC162PA2VCL2 907 aa16.24■□□□□ 0.19
CLN3-211ENST00000564091 MROH6A6NGR9 719 aa16.24■□□□□ 0.19
CLN3-211ENST00000564091 OR1I1O60431 355 aa16.24■□□□□ 0.19
CLN3-211ENST00000564091 CBX6O95503 412 aa16.24■□□□□ 0.19
CLN3-211ENST00000564091 AP2A1O95782 977 aa16.24■□□□□ 0.19
CLN3-211ENST00000564091 FTH1P02794 183 aa16.24■□□□□ 0.19
CLN3-211ENST00000564091 ALPPP05187 535 aa16.24■□□□□ 0.19
CLN3-211ENST00000564091 PTMAP06454 111 aaKnown RBP16.24■□□□□ 0.19
CLN3-211ENST00000564091 ALAS2P22557 587 aa16.24■□□□□ 0.19
CLN3-211ENST00000564091 NKAIN1Q4KMZ8 207 aa16.24■□□□□ 0.19
CLN3-211ENST00000564091 SYTL3Q4VX76 610 aa16.24■□□□□ 0.19
CLN3-211ENST00000564091 LYPLAL1Q5VWZ2 237 aa16.24■□□□□ 0.19
CLN3-211ENST00000564091 MRPL14Q6P1L8 145 aaKnown RBP16.24■□□□□ 0.19
CLN3-211ENST00000564091 TLDC1Q6P9B6 456 aa16.24■□□□□ 0.19
CLN3-211ENST00000564091 C2orf73Q8N5S3 287 aaPredicted RBP16.24■□□□□ 0.19
CLN3-211ENST00000564091 INPP5DQ92835 1189 aa16.24■□□□□ 0.19
CLN3-211ENST00000564091 NDC1Q9BTX1 674 aa16.24■□□□□ 0.19
CLN3-211ENST00000564091 AP1M1Q9BXS5 423 aa16.24■□□□□ 0.19
CLN3-211ENST00000564091 ILKAPQ9H0C8 392 aaPredicted RBP16.24■□□□□ 0.19
CLN3-211ENST00000564091 TXLNGQ9NUQ3 528 aa16.24■□□□□ 0.19
CLN3-211ENST00000564091 CIDEBQ9UHD4 219 aa16.24■□□□□ 0.19
CLN3-211ENST00000564091 PLCL2Q9UPR0 1127 aa16.24■□□□□ 0.19
CLN3-211ENST00000564091 R3HDM2Q9Y2K5 976 aaKnown RBP16.24■□□□□ 0.19
CLN3-211ENST00000564091 REXO2Q9Y3B8 237 aaKnown RBP16.24■□□□□ 0.19
CLN3-211ENST00000564091 SHANK1Q9Y566 2161 aa16.24■□□□□ 0.19
CLN3-211ENST00000564091 GRID2IPA4D2P6 1211 aa16.23■□□□□ 0.19
CLN3-211ENST00000564091 CLDN1O95832 211 aa16.23■□□□□ 0.19
CLN3-211ENST00000564091 PSMA3P25788 255 aa16.23■□□□□ 0.19
CLN3-211ENST00000564091 FOXN2P32314 431 aa16.23■□□□□ 0.19
CLN3-211ENST00000564091 SLC5A12Q1EHB4 618 aa16.23■□□□□ 0.19
CLN3-211ENST00000564091 ZNF787Q6DD87 383 aa16.23■□□□□ 0.19
CLN3-211ENST00000564091 IGFL3Q6UXB1 125 aa16.23■□□□□ 0.19
CLN3-211ENST00000564091 PACS1Q6VY07 963 aa16.23■□□□□ 0.19
CLN3-211ENST00000564091 LRRC57Q8N9N7 239 aa16.23■□□□□ 0.19
CLN3-211ENST00000564091 OR52K1Q8NGK4 314 aa16.23■□□□□ 0.19
CLN3-211ENST00000564091 RANBP9Q96S59 729 aa16.23■□□□□ 0.19
CLN3-211ENST00000564091 TMEM121Q9BTD3 319 aa16.23■□□□□ 0.19
CLN3-211ENST00000564091 EURLQ9NYK6 297 aa16.23■□□□□ 0.19
CLN3-211ENST00000564091 SLC2A6Q9UGQ3 507 aa16.23■□□□□ 0.19
CLN3-211ENST00000564091 SRPK3Q9UPE1 567 aa16.23■□□□□ 0.19
CLN3-211ENST00000564091 CREBBPQ92793 2442 aa16.23■□□□□ 0.19
CLN3-211ENST00000564091 GOLGA6L9A6NEM1 432 aa16.22■□□□□ 0.19
CLN3-211ENST00000564091 WIPF3A6NGB9 483 aa16.22■□□□□ 0.19
CLN3-211ENST00000564091 QSOX1O00391 747 aa16.22■□□□□ 0.19
CLN3-211ENST00000564091 ZNF189O75820 626 aaPredicted RBP16.22■□□□□ 0.19
CLN3-211ENST00000564091 LDLRP01130 860 aa16.22■□□□□ 0.19
CLN3-211ENST00000564091 IGHEP01854 428 aa16.22■□□□□ 0.19
CLN3-211ENST00000564091 CD63P08962 238 aa16.22■□□□□ 0.19
CLN3-211ENST00000564091 OR56A5P0C7T3 313 aa16.22■□□□□ 0.19
CLN3-211ENST00000564091 MAGP20916 626 aa16.22■□□□□ 0.19
CLN3-211ENST00000564091 GLRBP48167 497 aa16.22■□□□□ 0.19
CLN3-211ENST00000564091 KIR2DS3Q14952 304 aa16.22■□□□□ 0.19
CLN3-211ENST00000564091 CYP2A13Q16696 494 aa16.22■□□□□ 0.19
CLN3-211ENST00000564091 P3H1Q32P28 736 aa16.22■□□□□ 0.19
CLN3-211ENST00000564091 MAMDC2Q7Z304 686 aaPredicted RBP16.22■□□□□ 0.19
CLN3-211ENST00000564091 CUZD1Q86UP6 607 aa16.22■□□□□ 0.19
CLN3-211ENST00000564091 VRK3Q8IV63 474 aa16.22■□□□□ 0.19
CLN3-211ENST00000564091 MCATQ8IVS2 390 aaKnown RBP16.22■□□□□ 0.19
CLN3-211ENST00000564091 LINC01555Q8NAE3 123 aa16.22■□□□□ 0.19
CLN3-211ENST00000564091 TTC13Q8NBP0 860 aa16.22■□□□□ 0.19
CLN3-211ENST00000564091 ACRBPQ8NEB7 543 aa16.22■□□□□ 0.19
CLN3-211ENST00000564091 OR13J1Q8NGT2 312 aa16.22■□□□□ 0.19
CLN3-211ENST00000564091 HDAC10Q969S8 669 aa16.22■□□□□ 0.19
CLN3-211ENST00000564091 CALR3Q96L12 384 aaKnown RBP16.22■□□□□ 0.19
CLN3-211ENST00000564091 IL17FQ96PD4 163 aa16.22■□□□□ 0.19
CLN3-211ENST00000564091 ATP13A2Q9NQ11 1180 aa16.22■□□□□ 0.19
CLN3-211ENST00000564091 PACSIN2Q9UNF0 486 aaPredicted RBP16.22■□□□□ 0.19
CLN3-211ENST00000564091 NTNG1Q9Y2I2 539 aa16.22■□□□□ 0.19
CLN3-211ENST00000564091 COPG1Q9Y678 874 aaKnown RBP16.22■□□□□ 0.19
CLN3-211ENST00000564091 HIVEP3Q5T1R4 2406 aa16.21■□□□□ 0.19
CLN3-211ENST00000564091 ITPR2Q14571 2701 aa16.21■□□□□ 0.19
CLN3-211ENST00000564091 TCRBV7S2A1N4TA0A589 114 aa16.21■□□□□ 0.19
CLN3-211ENST00000564091 ANKUB1A6NFN9 424 aa16.21■□□□□ 0.19
CLN3-211ENST00000564091 BTNL10A8MVZ5 291 aa16.21■□□□□ 0.19
CLN3-211ENST00000564091 ALOX12BO75342 701 aa16.21■□□□□ 0.19
CLN3-211ENST00000564091 GOT2P00505 430 aaKnown RBP16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms