RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 LPGAT1Q92604 370 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 NAF1Q96HR8 494 aaKnown RBP5.31□□□□□ -1.56
VPS13C-209ENST00000560637 ZNF514Q96K75 400 aaPredicted RBP5.31□□□□□ -1.56
VPS13C-209ENST00000560637 NRTNQ99748 197 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 DPYSL5Q9BPU6 564 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 ECSITQ9BQ95 431 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 MCMBPQ9BTE3 642 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 TCEAL2Q9H3H9 227 aaPredicted RBP5.31□□□□□ -1.56
VPS13C-209ENST00000560637 GIMAP4Q9NUV9 329 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 OAS3Q9Y6K5 1087 aaKnown RBP5.31□□□□□ -1.56
VPS13C-209ENST00000560637 C5orf58C9J3I9 102 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 E7ESA3 106 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 NDUFS4O43181 175 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 E2F6O75461 281 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 PEX11BO96011 259 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 C8orf89P0DMQ9 161 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 GNAZP19086 355 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 ACTN3Q08043 901 aaPredicted RBP5.31□□□□□ -1.56
VPS13C-209ENST00000560637 ITIH4Q14624 930 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 PDK4Q16654 411 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 GRAMD1BQ3KR37 738 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 KHDC1Q4VXA5 237 aaKnown RBP5.31□□□□□ -1.56
VPS13C-209ENST00000560637 C1orf189Q5VU69 101 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 PRAMEF13Q5VWM6 474 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 KCTD11Q693B1 232 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 TCEAL6Q6IPX3 200 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 CYP2R1Q6VVX0 501 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 TEX26Q8N6G2 289 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 CEP70Q8NHQ1 597 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 ACMSDQ8TDX5 336 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 TWIST2Q8WVJ9 160 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 KCNJ9Q92806 393 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 TCEAL3Q969E4 200 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 ISG20Q96AZ6 181 aaKnown RBP5.31□□□□□ -1.56
VPS13C-209ENST00000560637 OTUB1Q96FW1 271 aaPredicted RBP5.31□□□□□ -1.56
VPS13C-209ENST00000560637 GAREM1Q9H706 876 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 SNX6Q9UNH7 406 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 TCF20Q9UGU0 1960 aaKnown RBP5.31□□□□□ -1.56
VPS13C-209ENST00000560637 KRBA1A5PL33 1030 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 PATE3B3GLJ2 98 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 K7EQS6 105 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 HDAC3O15379 428 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 ERI3O43414 337 aaKnown RBP5.3□□□□□ -1.56
VPS13C-209ENST00000560637 OR10H2O60403 315 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 CISD3P0C7P0 127 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 LINC00271P0C7V0 271 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 CR2P20023 1033 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 MAGP20916 626 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 ADRA1AP35348 466 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 TNFRSF4P43489 277 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 CCR4P51679 360 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 FBXW4P57775 412 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 OLR1P78380 273 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 CCINQ13939 588 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 IHHQ14623 411 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 IL23RQ5VWK5 629 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 NKAIN2Q5VXU1 208 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 ANKRD26P1Q6NSI1 321 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 RGS9BPQ6ZS82 235 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 DPPA4Q7L190 304 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 ETFBKMTQ8IXQ9 262 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 ZNF683Q8IZ20 524 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 ICA1LQ8NDH6 482 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 TMIEQ8NEW7 156 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 VPS37AQ8NEZ2 397 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 HM13Q8TCT9 377 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 OR1E3Q8WZA6 343 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 OTULINQ96BN8 352 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 PTERQ96BW5 349 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 ALG14Q96F25 216 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 PRPF18Q99633 342 aaKnown RBP5.3□□□□□ -1.56
VPS13C-209ENST00000560637 AIF1LQ9BQI0 150 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 TBC1D10AQ9BXI6 508 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 S1PR5Q9H228 398 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 ARRDC1-AS1Q9H2J1 176 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 OBP2AQ9NY56 170 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 KCNK4Q9NYG8 393 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 PSD3Q9NYI0 1048 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 DHRS7Q9Y394 339 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 OR51B4Q9Y5P0 310 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 SPACA6W5XKT8 324 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 PRSS38A1L453 326 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 TMEM114B3SHH9 223 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 PRAMEF26H0Y7S4 382 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 RGS14O43566 566 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 B4GALT2O60909 372 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 PAPSS2O95340 614 aaPredicted RBP5.3□□□□□ -1.56
VPS13C-209ENST00000560637 CLDN9O95484 217 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 BCKDHBP21953 392 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 PRDX3P30048 256 aaKnown RBP5.3□□□□□ -1.56
VPS13C-209ENST00000560637 LEPRP48357 1165 aaKnown RBP5.3□□□□□ -1.56
VPS13C-209ENST00000560637 PGDP52209 483 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 VSX2P58304 361 aaPredicted RBP5.3□□□□□ -1.56
VPS13C-209ENST00000560637 HNRNPKP61978 463 aaKnown RBP eCLIP5.3□□□□□ -1.56
VPS13C-209ENST00000560637 SLC25A3Q00325 362 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 VAC14Q08AM6 782 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 BNIP3Q12983 259 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 ELOCQ15369 112 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 CYP51A1Q16850 503 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 LRRC23Q53EV4 343 aaPredicted RBP5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms