RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 ZNF891A8MT65 544 aaPredicted RBP8.42□□□□□ -1.06
USP3-208ENST00000558285 ERVH48-1M5A8F1 160 aa8.42□□□□□ -1.06
USP3-208ENST00000558285 RAD1O60671 282 aa8.42□□□□□ -1.06
USP3-208ENST00000558285 ITGB2P05107 769 aa8.42□□□□□ -1.06
USP3-208ENST00000558285 KLK3P07288 261 aaPredicted RBP8.42□□□□□ -1.06
USP3-208ENST00000558285 FESP07332 822 aa8.42□□□□□ -1.06
USP3-208ENST00000558285 CCL4P13236 92 aa8.42□□□□□ -1.06
USP3-208ENST00000558285 ZNF16P17020 682 aaPredicted RBP8.42□□□□□ -1.06
USP3-208ENST00000558285 CHRM3P20309 590 aa8.42□□□□□ -1.06
USP3-208ENST00000558285 GRIA1P42261 906 aa8.42□□□□□ -1.06
USP3-208ENST00000558285 SEPHS1P49903 392 aa8.42□□□□□ -1.06
USP3-208ENST00000558285 ARL4CP56559 192 aa8.42□□□□□ -1.06
USP3-208ENST00000558285 RP1P56715 2156 aa8.42□□□□□ -1.06
USP3-208ENST00000558285 ABHD18Q0P651 414 aa8.42□□□□□ -1.06
USP3-208ENST00000558285 CLN3Q13286 438 aa8.42□□□□□ -1.06
USP3-208ENST00000558285 TUBB3Q13509 450 aa8.42□□□□□ -1.06
USP3-208ENST00000558285 KIR2DS3Q14952 304 aa8.42□□□□□ -1.06
USP3-208ENST00000558285 SPANXN3Q5MJ09 141 aa8.42□□□□□ -1.06
USP3-208ENST00000558285 ANKS6Q68DC2 871 aa8.42□□□□□ -1.06
USP3-208ENST00000558285 TTC19Q6DKK2 380 aaPredicted RBP8.42□□□□□ -1.06
USP3-208ENST00000558285 SLC22A15Q8IZD6 547 aa8.42□□□□□ -1.06
USP3-208ENST00000558285 GLIS1Q8NBF1 620 aa8.42□□□□□ -1.06
USP3-208ENST00000558285 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.42□□□□□ -1.06
USP3-208ENST00000558285 OR4E2Q8NGC2 313 aa8.42□□□□□ -1.06
USP3-208ENST00000558285 OR5K2Q8NHB8 316 aa8.42□□□□□ -1.06
USP3-208ENST00000558285 CPT1BQ92523 772 aa8.42□□□□□ -1.06
USP3-208ENST00000558285 RSC1A1Q92681 617 aa8.42□□□□□ -1.06
USP3-208ENST00000558285 SNF8Q96H20 258 aa8.42□□□□□ -1.06
USP3-208ENST00000558285 CAPZA3Q96KX2 299 aa8.42□□□□□ -1.06
USP3-208ENST00000558285 SERPINB12Q96P63 405 aa8.42□□□□□ -1.06
USP3-208ENST00000558285 OR6C1Q96RD1 312 aa8.42□□□□□ -1.06
USP3-208ENST00000558285 HGH1Q9BTY7 390 aa8.42□□□□□ -1.06
USP3-208ENST00000558285 RAB17Q9H0T7 212 aa8.42□□□□□ -1.06
USP3-208ENST00000558285 EPN3Q9H201 632 aa8.42□□□□□ -1.06
USP3-208ENST00000558285 GPN2Q9H9Y4 310 aaPredicted RBP8.42□□□□□ -1.06
USP3-208ENST00000558285 C20orf96Q9NUD7 363 aaPredicted RBP8.42□□□□□ -1.06
USP3-208ENST00000558285 NSMCE4AQ9NXX6 385 aa8.42□□□□□ -1.06
USP3-208ENST00000558285 SLC2A6Q9UGQ3 507 aa8.42□□□□□ -1.06
USP3-208ENST00000558285 CFAP20Q9Y6A4 193 aaKnown RBP8.42□□□□□ -1.06
USP3-208ENST00000558285 APC2O95996 2303 aa8.41□□□□□ -1.06
USP3-208ENST00000558285 SCN8AQ9UQD0 1980 aa8.41□□□□□ -1.06
USP3-208ENST00000558285 UNC13CQ8NB66 2214 aa8.41□□□□□ -1.06
USP3-208ENST00000558285 C9orf172C9J069 976 aa8.41□□□□□ -1.06
USP3-208ENST00000558285 DNALI1O14645 258 aaPredicted RBP8.41□□□□□ -1.06
USP3-208ENST00000558285 VPS26AO75436 327 aa8.41□□□□□ -1.06
USP3-208ENST00000558285 KRT37O76014 449 aa8.41□□□□□ -1.06
USP3-208ENST00000558285 STK17BO94768 372 aa8.41□□□□□ -1.06
USP3-208ENST00000558285 CATP04040 527 aaKnown RBP8.41□□□□□ -1.06
USP3-208ENST00000558285 FGF5P12034 268 aa8.41□□□□□ -1.06
USP3-208ENST00000558285 ENO3P13929 434 aaPredicted RBP8.41□□□□□ -1.06
USP3-208ENST00000558285 NMBRP28336 390 aa8.41□□□□□ -1.06
USP3-208ENST00000558285 SKIV2L2P42285 1042 aaKnown RBP8.41□□□□□ -1.06
USP3-208ENST00000558285 MAGEA8P43361 318 aa8.41□□□□□ -1.06
USP3-208ENST00000558285 PREPP48147 710 aa8.41□□□□□ -1.06
USP3-208ENST00000558285 RGS4P49798 205 aa8.41□□□□□ -1.06
USP3-208ENST00000558285 CDKN1CP49918 316 aaPredicted RBP8.41□□□□□ -1.06
USP3-208ENST00000558285 RAB28P51157 221 aa8.41□□□□□ -1.06
USP3-208ENST00000558285 SETDB1Q15047 1291 aa8.41□□□□□ -1.06
USP3-208ENST00000558285 TYSND1Q2T9J0 566 aa8.41□□□□□ -1.06
USP3-208ENST00000558285 IZUMO3Q5VZ72 239 aa8.41□□□□□ -1.06
USP3-208ENST00000558285 ZNF470Q6ECI4 717 aa8.41□□□□□ -1.06
USP3-208ENST00000558285 TTC27Q6P3X3 843 aa8.41□□□□□ -1.06
USP3-208ENST00000558285 C6orf15Q6UXA7 325 aaPredicted RBP8.41□□□□□ -1.06
USP3-208ENST00000558285 KIAA0408Q6ZU52 694 aa8.41□□□□□ -1.06
USP3-208ENST00000558285 PRUNE1Q86TP1 453 aa8.41□□□□□ -1.06
USP3-208ENST00000558285 KLHL7Q8IXQ5 586 aa8.41□□□□□ -1.06
USP3-208ENST00000558285 OR52E1Q8NGJ3 308 aa8.41□□□□□ -1.06
USP3-208ENST00000558285 SNRNP27Q8WVK2 155 aaKnown RBP8.41□□□□□ -1.06
USP3-208ENST00000558285 TCTN2Q96GX1 697 aa8.41□□□□□ -1.06
USP3-208ENST00000558285 SLC41A2Q96JW4 573 aa8.41□□□□□ -1.06
USP3-208ENST00000558285 DPH2Q9BQC3 489 aaPredicted RBP8.41□□□□□ -1.06
USP3-208ENST00000558285 DDX47Q9H0S4 455 aaKnown RBP8.41□□□□□ -1.06
USP3-208ENST00000558285 PRORYQ9H606 182 aa8.41□□□□□ -1.06
USP3-208ENST00000558285 LATS2Q9NRM7 1088 aa8.41□□□□□ -1.06
USP3-208ENST00000558285 OCIAD1Q9NX40 245 aa8.41□□□□□ -1.06
USP3-208ENST00000558285 SEMA5BQ9P283 1151 aa8.41□□□□□ -1.06
USP3-208ENST00000558285 POMT2Q9UKY4 750 aa8.41□□□□□ -1.06
USP3-208ENST00000558285 CORO1CQ9ULV4 474 aaPredicted RBP8.41□□□□□ -1.06
USP3-208ENST00000558285 G3BP2Q9UN86 482 aaKnown RBP8.41□□□□□ -1.06
USP3-208ENST00000558285 TDRKHQ9Y2W6 561 aaKnown RBP8.41□□□□□ -1.06
USP3-208ENST00000558285 TMEM184BQ9Y519 407 aaPredicted RBP8.41□□□□□ -1.06
USP3-208ENST00000558285 B3GALT1Q9Y5Z6 326 aa8.41□□□□□ -1.06
USP3-208ENST00000558285 AP1M2Q9Y6Q5 423 aa8.41□□□□□ -1.06
USP3-208ENST00000558285 ARHGEF17Q96PE2 2063 aaPredicted RBP8.41□□□□□ -1.06
USP3-208ENST00000558285 MYLKQ15746 1914 aa8.41□□□□□ -1.06
USP3-208ENST00000558285 ZNF106Q9H2Y7 1883 aaKnown RBP8.41□□□□□ -1.06
USP3-208ENST00000558285 SLC5A10A0PJK1 596 aa8.4□□□□□ -1.06
USP3-208ENST00000558285 FAM187AA6NFU0 413 aa8.4□□□□□ -1.06
USP3-208ENST00000558285 OR51F1A6NGY5 319 aa8.4□□□□□ -1.06
USP3-208ENST00000558285 GOLGA8MH3BSY2 632 aa8.4□□□□□ -1.06
USP3-208ENST00000558285 K7ENP7 123 aa8.4□□□□□ -1.06
USP3-208ENST00000558285 PDLIM1O00151 329 aa8.4□□□□□ -1.06
USP3-208ENST00000558285 AGRPO00253 132 aa8.4□□□□□ -1.06
USP3-208ENST00000558285 EIF3FO00303 357 aaPredicted RBP8.4□□□□□ -1.06
USP3-208ENST00000558285 SGTAO43765 313 aa8.4□□□□□ -1.06
USP3-208ENST00000558285 CPNE3O75131 537 aaKnown RBP8.4□□□□□ -1.06
USP3-208ENST00000558285 SLCO2B1O94956 709 aa8.4□□□□□ -1.06
USP3-208ENST00000558285 CCNDBP1O95273 360 aa8.4□□□□□ -1.06
USP3-208ENST00000558285 S1PR4O95977 384 aa8.4□□□□□ -1.06
USP3-208ENST00000558285 RHOXF2BP0C7M4 288 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 594.9 ms