RNA–Protein interactions for RNA: ENST00000554971.6

SHOX-204, Transcript of short stature homeobox, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHOX, Length 1,902 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-204ENST00000554971 PDAP1Q13442 181 aaKnown RBP16.99■□□□□ 0.31
SHOX-204ENST00000554971 PLA2G2CQ5R387 149 aa16.99■□□□□ 0.31
SHOX-204ENST00000554971 HENMT1Q5T8I9 393 aaKnown RBP16.99■□□□□ 0.31
SHOX-204ENST00000554971 EFL1Q7Z2Z2 1120 aaKnown RBP16.99■□□□□ 0.31
SHOX-204ENST00000554971 PCYOX1LQ8NBM8 494 aa16.99■□□□□ 0.31
SHOX-204ENST00000554971 DENND6BQ8NEG7 585 aa16.99■□□□□ 0.31
SHOX-204ENST00000554971 OR13C4Q8NGS5 318 aa16.99■□□□□ 0.31
SHOX-204ENST00000554971 TSPEARQ8WU66 669 aa16.99■□□□□ 0.31
SHOX-204ENST00000554971 UNKQ9C0B0 810 aaKnown RBP16.99■□□□□ 0.31
SHOX-204ENST00000554971 SUDS3Q9H7L9 328 aaPredicted RBP16.99■□□□□ 0.31
SHOX-204ENST00000554971 SPAG4Q9NPE6 437 aa16.99■□□□□ 0.31
SHOX-204ENST00000554971 PFDN4Q9NQP4 134 aa16.99■□□□□ 0.31
SHOX-204ENST00000554971 RAB23Q9ULC3 237 aa16.99■□□□□ 0.31
SHOX-204ENST00000554971 CRYL1Q9Y2S2 319 aa16.99■□□□□ 0.31
SHOX-204ENST00000554971 COMMD10Q9Y6G5 202 aa16.99■□□□□ 0.31
SHOX-204ENST00000554971 CNOT1A5YKK6 2376 aaKnown RBP16.99■□□□□ 0.31
SHOX-204ENST00000554971 GAPDHSO14556 408 aaPredicted RBP16.98■□□□□ 0.31
SHOX-204ENST00000554971 KERAO60938 352 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 PYGLP06737 847 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 FESP07332 822 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 MPLP40238 635 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 KCNC1P48547 511 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 MRPL19P49406 292 aaKnown RBP16.98■□□□□ 0.31
SHOX-204ENST00000554971 AQP4P55087 323 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 TIAL1Q01085 375 aaKnown RBP eCLIP16.98■□□□□ 0.31
SHOX-204ENST00000554971 GRIK2Q13002 908 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 GRAMD1BQ3KR37 738 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 AGKQ53H12 422 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 SAMD4BQ5PRF9 694 aaKnown RBP16.98■□□□□ 0.31
SHOX-204ENST00000554971 TPRG1LQ5T0D9 272 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 PRMT9Q6P2P2 845 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 ABI3BPQ7Z7G0 1075 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 SLC22A18ASQ8N1D0 253 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 MARVELD2Q8N4S9 558 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 NKAPQ8N5F7 415 aaKnown RBP16.98■□□□□ 0.31
SHOX-204ENST00000554971 EFCAB3Q8N7B9 438 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 BHLHE22Q8NFJ8 381 aaPredicted RBP16.98■□□□□ 0.31
SHOX-204ENST00000554971 PTERQ96BW5 349 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 C19orf60Q96EN9 201 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 NPAS2Q99743 824 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 CCDC68Q9H2F9 335 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 TMEM45AQ9NWC5 275 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 RIMS3Q9UJD0 308 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 CCL22O00626 93 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 GPR39O43194 453 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 AHCYL1O43865 530 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 NRP2O60462 931 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 C8BP07358 591 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 RETP07949 1114 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 CSNK1EP49674 416 aaKnown RBP16.98■□□□□ 0.31
SHOX-204ENST00000554971 MS4A2Q01362 244 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 BNC1Q01954 994 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 DPTQ07507 201 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 INPP5AQ14642 412 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 COQ5Q5HYK3 327 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 TCEAL6Q6IPX3 200 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 C8orf82Q6P1X6 216 aaPredicted RBP16.98■□□□□ 0.31
SHOX-204ENST00000554971 TICAM1Q8IUC6 712 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 RAVER1Q8IY67 606 aaKnown RBP16.98■□□□□ 0.31
SHOX-204ENST00000554971 OR4K2Q8NGD2 314 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 TCEAL3Q969E4 200 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 ATOH8Q96SQ7 321 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 TSC22D3Q99576 134 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 HOPXQ9BPY8 73 aaPredicted RBP16.98■□□□□ 0.31
SHOX-204ENST00000554971 CENPKQ9BS16 269 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 C1QTNF3Q9BXJ4 246 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 IL26Q9NPH9 171 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 FSCN3Q9NQT6 498 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 GPR27Q9NS67 375 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 NDUFA13Q9P0J0 144 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 NDUFAF1Q9Y375 327 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 PCDHGA5Q9Y5G8 931 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 HS3ST3A1Q9Y663 406 aa16.98■□□□□ 0.31
SHOX-204ENST00000554971 UBFD1O14562 309 aaKnown RBP16.97■□□□□ 0.31
SHOX-204ENST00000554971 AZIN1O14977 448 aa16.97■□□□□ 0.31
SHOX-204ENST00000554971 PCCBP05166 539 aa16.97■□□□□ 0.31
SHOX-204ENST00000554971 UBTFL6P0CB48 400 aaPredicted RBP16.97■□□□□ 0.31
SHOX-204ENST00000554971 CD1EP15812 388 aa16.97■□□□□ 0.31
SHOX-204ENST00000554971 CD38P28907 300 aa16.97■□□□□ 0.31
SHOX-204ENST00000554971 AKT2P31751 481 aa16.97■□□□□ 0.31
SHOX-204ENST00000554971 HOXD12P35452 270 aa16.97■□□□□ 0.31
SHOX-204ENST00000554971 TRIM23P36406 574 aa16.97■□□□□ 0.31
SHOX-204ENST00000554971 DPP6P42658 865 aa16.97■□□□□ 0.31
SHOX-204ENST00000554971 AFF3P51826 1226 aaKnown RBP16.97■□□□□ 0.31
SHOX-204ENST00000554971 PKNOX1P55347 436 aa16.97■□□□□ 0.31
SHOX-204ENST00000554971 FOLH1Q04609 750 aa16.97■□□□□ 0.31
SHOX-204ENST00000554971 REP15Q6BDI9 236 aa16.97■□□□□ 0.31
SHOX-204ENST00000554971 GK5Q6ZS86 529 aa16.97■□□□□ 0.31
SHOX-204ENST00000554971 ASCL5Q7RTU5 278 aa16.97■□□□□ 0.31
SHOX-204ENST00000554971 LDB1Q86U70 411 aaPredicted RBP16.97■□□□□ 0.31
SHOX-204ENST00000554971 PTGR2Q8N8N7 351 aaPredicted RBP16.97■□□□□ 0.31
SHOX-204ENST00000554971 OR13H1Q8NG92 308 aa16.97■□□□□ 0.31
SHOX-204ENST00000554971 AP2M1Q96CW1 435 aa16.97■□□□□ 0.31
SHOX-204ENST00000554971 CCT7Q99832 543 aa16.97■□□□□ 0.31
SHOX-204ENST00000554971 RIOK2Q9BVS4 552 aaKnown RBP16.97■□□□□ 0.31
SHOX-204ENST00000554971 CAAP1Q9H8G2 361 aa16.97■□□□□ 0.31
SHOX-204ENST00000554971 AASDHPPTQ9NRN7 309 aa16.97■□□□□ 0.31
SHOX-204ENST00000554971 ADA2Q9NZK5 511 aa16.97■□□□□ 0.31
SHOX-204ENST00000554971 PKD2L2Q9NZM6 624 aa16.97■□□□□ 0.31
SHOX-204ENST00000554971 NFKBIL1Q9UBC1 381 aaPredicted RBP16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms