RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 PKP3Q9Y446 797 aa17.17■□□□□ 0.34
SYNE3-202ENST00000553340 RAI2Q9Y5P3 530 aa17.17■□□□□ 0.34
SYNE3-202ENST00000553340 CYP4B1P13584 511 aa17.17■□□□□ 0.34
SYNE3-202ENST00000553340 PLPP6Q8IY26 295 aa17.17■□□□□ 0.34
SYNE3-202ENST00000553340 ZNF540Q8NDQ6 660 aa17.17■□□□□ 0.34
SYNE3-202ENST00000553340 OR10Q1Q8NGQ4 319 aa17.17■□□□□ 0.34
SYNE3-202ENST00000553340 CEP295NLQ96MC4 621 aa17.17■□□□□ 0.34
SYNE3-202ENST00000553340 CPPED1Q9BRF8 314 aaPredicted RBP17.17■□□□□ 0.34
SYNE3-202ENST00000553340 CCNB1IP1Q9NPC3 277 aa17.17■□□□□ 0.34
SYNE3-202ENST00000553340 SLC6A13Q9NSD5 602 aa17.17■□□□□ 0.34
SYNE3-202ENST00000553340 FARSBQ9NSD9 589 aaKnown RBP17.17■□□□□ 0.34
SYNE3-202ENST00000553340 VNN3Q9NY84 501 aa17.17■□□□□ 0.34
SYNE3-202ENST00000553340 RNF181Q9P0P0 153 aa17.17■□□□□ 0.34
SYNE3-202ENST00000553340 AGO1Q9UL18 857 aaKnown RBP17.17■□□□□ 0.34
SYNE3-202ENST00000553340 GMPPBQ9Y5P6 360 aa17.17■□□□□ 0.34
SYNE3-202ENST00000553340 ZBBXA8MT70 800 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 TTC34A8MYJ7 566 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 H7C0S8 307 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 RGS10O43665 173 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 FADS2O95864 444 aaKnown RBP17.16■□□□□ 0.34
SYNE3-202ENST00000553340 GLUD1P00367 558 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 MT-ND2P03891 347 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 PABPC1P11940 636 aaKnown RBP17.16■□□□□ 0.34
SYNE3-202ENST00000553340 MAGEA2P43356 314 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 MASP1P48740 699 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 CLK3P49761 638 aaKnown RBP17.16■□□□□ 0.34
SYNE3-202ENST00000553340 PPP5CP53041 499 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 MAPK11Q15759 364 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 PRSS48Q7RTY5 328 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 PAGE2Q7Z2X7 111 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 TRIM46Q7Z4K8 759 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 DSG4Q86SJ6 1040 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 PLD3Q8IV08 490 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 EFHD2Q96C19 240 aaPredicted RBP17.16■□□□□ 0.34
SYNE3-202ENST00000553340 LGALS12Q96DT0 336 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 DACH2Q96NX9 599 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 EGFL8Q99944 293 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 SGIP1Q9BQI5 828 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 ZNF408Q9H9D4 720 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 ASIC5Q9NY37 505 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 SCHIP1Q9P0W5 487 aaPredicted RBP17.16■□□□□ 0.34
SYNE3-202ENST00000553340 AASSQ9UDR5 926 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 ZNF229Q9UJW7 825 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 ZNF490Q9ULM2 529 aaPredicted RBP17.16■□□□□ 0.34
SYNE3-202ENST00000553340 PCDHB1Q9Y5F3 818 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 DOCK3Q8IZD9 2030 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 PER2O15055 1255 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 TAPBPO15533 448 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 MYO1DO94832 1006 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 GZMMP51124 257 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 MTA1Q13330 715 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 GTF2H3Q13889 308 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 SGO1Q5FBB7 561 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 SUSD1Q6UWL2 747 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 RNF165Q6ZSG1 346 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 SERINC5Q86VE9 423 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 TMEM132CQ8N3T6 1108 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 TTC9BQ8N6N2 239 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 RHOXF1Q8NHV9 184 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 TBC1D20Q96BZ9 403 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 B3GALT6Q96L58 329 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 SLIRPQ9GZT3 109 aaKnown RBP17.16■□□□□ 0.34
SYNE3-202ENST00000553340 KCNH6Q9H252 994 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 EPS8L2Q9H6S3 715 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 ACOT13Q9NPJ3 140 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 ELOVL2Q9NXB9 296 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 OPTCQ9UBM4 332 aa17.16■□□□□ 0.34
SYNE3-202ENST00000553340 SAMD4AQ9UPU9 718 aaKnown RBP17.16■□□□□ 0.34
SYNE3-202ENST00000553340 MYADML2A6NDP7 307 aa17.15■□□□□ 0.34
SYNE3-202ENST00000553340 H0Y626 953 aa17.15■□□□□ 0.34
SYNE3-202ENST00000553340 KDELR3O43731 214 aa17.15■□□□□ 0.34
SYNE3-202ENST00000553340 MRPS14O60783 128 aaKnown RBP17.15■□□□□ 0.34
SYNE3-202ENST00000553340 WDR47O94967 919 aa17.15■□□□□ 0.34
SYNE3-202ENST00000553340 TRIM16O95361 564 aa17.15■□□□□ 0.34
SYNE3-202ENST00000553340 SERPINB1P30740 379 aa17.15■□□□□ 0.34
SYNE3-202ENST00000553340 MAGEA11P43364 429 aa17.15■□□□□ 0.34
SYNE3-202ENST00000553340 DSC3Q14574 896 aa17.15■□□□□ 0.34
SYNE3-202ENST00000553340 PLEKHG6Q3KR16 790 aa17.15■□□□□ 0.34
SYNE3-202ENST00000553340 CARD16Q5EG05 197 aa17.15■□□□□ 0.34
SYNE3-202ENST00000553340 PTRHD1Q6GMV3 140 aaKnown RBP17.15■□□□□ 0.34
SYNE3-202ENST00000553340 RGL4Q8IZJ4 473 aa17.15■□□□□ 0.34
SYNE3-202ENST00000553340 ATAD1Q8NBU5 361 aa17.15■□□□□ 0.34
SYNE3-202ENST00000553340 CLHC1Q8NHS4 586 aa17.15■□□□□ 0.34
SYNE3-202ENST00000553340 BTBD2Q9BX70 525 aa17.15■□□□□ 0.34
SYNE3-202ENST00000553340 DSN1Q9H410 356 aa17.15■□□□□ 0.34
SYNE3-202ENST00000553340 ANKHQ9HCJ1 492 aa17.15■□□□□ 0.34
SYNE3-202ENST00000553340 POLE4Q9NR33 117 aa17.15■□□□□ 0.34
SYNE3-202ENST00000553340 A0A096LPI6 279 aa17.15■□□□□ 0.34
SYNE3-202ENST00000553340 GPR39O43194 453 aa17.15■□□□□ 0.34
SYNE3-202ENST00000553340 TSPAN3O60637 253 aa17.15■□□□□ 0.34
SYNE3-202ENST00000553340 FAM20BO75063 409 aa17.15■□□□□ 0.34
SYNE3-202ENST00000553340 THPOP40225 353 aa17.15■□□□□ 0.34
SYNE3-202ENST00000553340 GDF5P43026 501 aa17.15■□□□□ 0.34
SYNE3-202ENST00000553340 DAPP51397 102 aa17.15■□□□□ 0.34
SYNE3-202ENST00000553340 LAPTM4AQ15012 233 aa17.15■□□□□ 0.34
SYNE3-202ENST00000553340 KCNJ8Q15842 424 aa17.15■□□□□ 0.34
SYNE3-202ENST00000553340 USP39Q53GS9 565 aaKnown RBP17.15■□□□□ 0.34
SYNE3-202ENST00000553340 VARS2Q5ST30 1063 aaKnown RBP17.15■□□□□ 0.34
SYNE3-202ENST00000553340 LRIF1Q5T3J3 769 aa17.15■□□□□ 0.34
SYNE3-202ENST00000553340 LAIR1Q6GTX8 287 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms