RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 BCKDHAP12694 445 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 PTPN2P17706 415 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 CDKN2CP42773 168 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 NSG1P42857 185 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 SOX9P48436 509 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 MNX1P50219 401 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-215ENST00000552823 LBX1P52954 281 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 LSM3P62310 102 aaKnown RBP5.46□□□□□ -1.54
LIMA1-215ENST00000552823 NKX3-2P78367 333 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 CHRNB3Q05901 458 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 C16orf72Q14CZ0 275 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 SLC14A2Q15849 920 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 ZXDCQ2QGD7 858 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-215ENST00000552823 ZFP1Q6P2D0 407 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 UGT2A3Q6UWM9 527 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 CCDC149Q6ZUS6 474 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 CLVS1Q8IUQ0 354 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-215ENST00000552823 SYT12Q8IV01 421 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 CRIPAKQ8N1N5 446 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 OR2T12Q8NG77 320 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 OR4K1Q8NGD4 311 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 OR2A12Q8NGT7 310 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 OR5AK3PQ8NH89 298 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 FIBINQ8TAL6 211 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 MCOLN3Q8TDD5 553 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 ZNF483Q8TF39 744 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-215ENST00000552823 NXPE3Q969Y0 559 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 TMEM125Q96AQ2 219 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 SCRN2Q96FV2 425 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 HIC2Q96JB3 615 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 HEPHQ9BQS7 1158 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 EMILIN2Q9BXX0 1053 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 CD244Q9BZW8 370 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 OR51B5Q9H339 312 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 AMBNQ9NP70 447 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 PRDM8Q9NQV8 689 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 DUS2Q9NX74 493 aaKnown RBP5.46□□□□□ -1.54
LIMA1-215ENST00000552823 ZDHHC3Q9NYG2 299 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 NUDT4Q9NZJ9 180 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 C5AR2Q9P296 337 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 TMPRSS11EQ9UL52 423 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 NLRC5Q86WI3 1866 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 COL4A6Q14031 1691 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 MYO15AQ9UKN7 3530 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 SYNDIG1LA6NDD5 238 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 OTOL1A6NHN0 477 aaPredicted RBP5.45□□□□□ -1.54
LIMA1-215ENST00000552823 C16orf96A6NNT2 1141 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 RTCAO00442 366 aaKnown RBP5.45□□□□□ -1.54
LIMA1-215ENST00000552823 CLDN9O95484 217 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 TIMP1P01033 207 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 KRT6AP02538 564 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 KRT6BP04259 564 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 FGF4P08620 206 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 IL7RP16871 459 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 ZNF26P17031 533 aaPredicted RBP5.45□□□□□ -1.54
LIMA1-215ENST00000552823 ELK4P28324 431 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 SLC7A1P30825 629 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 GPR1P46091 355 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 KRT6CP48668 564 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 ALDH9A1P49189 494 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 SPINT3P49223 89 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 DGKGP49619 791 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 LRRC74AQ0VAA2 488 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 HKDC1Q2TB90 917 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 KLHDC10Q6PID8 442 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 TXNDC11Q6PKC3 985 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 CERS6Q6ZMG9 384 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 CYP2U1Q7Z449 544 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 TMC8Q8IU68 726 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 ZNF740Q8NDX6 193 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 ADCY4Q8NFM4 1077 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 TSPAN14Q8NG11 270 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 OR52J3Q8NH60 311 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 SLC13A3Q8WWT9 602 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 MAL2Q969L2 176 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 OSBPL6Q9BZF3 934 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 ZBP1Q9H171 429 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 P2RY12Q9H244 342 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 YY1AP1Q9H869 796 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 TM7SF3Q9NS93 570 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 SMOXQ9NWM0 555 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 KCTD5Q9NXV2 234 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 WARS2Q9UGM6 360 aaKnown RBP5.45□□□□□ -1.54
LIMA1-215ENST00000552823 RAPGEFL1Q9UHV5 662 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 PCDHB1Q9Y5F3 818 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 FADS3Q9Y5Q0 445 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 CHD9Q3L8U1 2897 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 TRPM6Q9BX84 2022 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 FADS2P1A8MWK0 482 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 CFAP99D6REC4 459 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 KIF1CO43896 1103 aaKnown RBP5.45□□□□□ -1.54
LIMA1-215ENST00000552823 PRAMEF4O60810 478 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 WISP3O95389 354 aaPredicted RBP5.45□□□□□ -1.54
LIMA1-215ENST00000552823 PGRP06401 933 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 EPHX1P07099 455 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 CA3P07451 260 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 CTSLP07711 333 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 COX7A2P14406 83 aa5.45□□□□□ -1.54
LIMA1-215ENST00000552823 ATP1B2P14415 290 aaPredicted RBP5.45□□□□□ -1.54
LIMA1-215ENST00000552823 TIMP2P16035 220 aa5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms