RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 PTERQ96BW5 349 aa12.4□□□□□ -0.42
PTCH1-218ENST00000548945 ALS2CR12Q96Q35 445 aa12.4□□□□□ -0.42
PTCH1-218ENST00000548945 BARD1Q99728 777 aaKnown RBP12.4□□□□□ -0.42
PTCH1-218ENST00000548945 TRIM5Q9C035 493 aa12.4□□□□□ -0.42
PTCH1-218ENST00000548945 TXLNGQ9NUQ3 528 aa12.4□□□□□ -0.42
PTCH1-218ENST00000548945 P4HTMQ9NXG6 502 aa12.4□□□□□ -0.42
PTCH1-218ENST00000548945 SMARCAL1Q9NZC9 954 aa12.4□□□□□ -0.42
PTCH1-218ENST00000548945 MAP10Q9P2G4 905 aa12.4□□□□□ -0.42
PTCH1-218ENST00000548945 IFT80Q9P2H3 777 aaPredicted RBP12.4□□□□□ -0.42
PTCH1-218ENST00000548945 NDOR1Q9UHB4 597 aa12.4□□□□□ -0.42
PTCH1-218ENST00000548945 PTRH2Q9Y3E5 179 aaKnown RBP12.4□□□□□ -0.42
PTCH1-218ENST00000548945 APCP25054 2843 aa12.39□□□□□ -0.43
PTCH1-218ENST00000548945 SLC5A10A0PJK1 596 aa12.39□□□□□ -0.43
PTCH1-218ENST00000548945 MROH6A6NGR9 719 aa12.39□□□□□ -0.43
PTCH1-218ENST00000548945 BTNL10A8MVZ5 291 aa12.39□□□□□ -0.43
PTCH1-218ENST00000548945 F8W8V4 182 aa12.39□□□□□ -0.43
PTCH1-218ENST00000548945 PSMD3O43242 534 aa12.39□□□□□ -0.43
PTCH1-218ENST00000548945 AP2A1O95782 977 aa12.39□□□□□ -0.43
PTCH1-218ENST00000548945 RAPSNQ13702 412 aa12.39□□□□□ -0.43
PTCH1-218ENST00000548945 P3H1Q32P28 736 aa12.39□□□□□ -0.43
PTCH1-218ENST00000548945 NKAIN1Q4KMZ8 207 aa12.39□□□□□ -0.43
PTCH1-218ENST00000548945 CRB2Q5IJ48 1285 aa12.39□□□□□ -0.43
PTCH1-218ENST00000548945 TRIM73Q86UV7 250 aa12.39□□□□□ -0.43
PTCH1-218ENST00000548945 ZADH2Q8N4Q0 377 aa12.39□□□□□ -0.43
PTCH1-218ENST00000548945 DNAJC22Q8N4W6 341 aa12.39□□□□□ -0.43
PTCH1-218ENST00000548945 TTC13Q8NBP0 860 aa12.39□□□□□ -0.43
PTCH1-218ENST00000548945 DENND1AQ8TEH3 1009 aa12.39□□□□□ -0.43
PTCH1-218ENST00000548945 COG1Q8WTW3 980 aa12.39□□□□□ -0.43
PTCH1-218ENST00000548945 ELMO1Q92556 727 aa12.39□□□□□ -0.43
PTCH1-218ENST00000548945 DLG3Q92796 817 aa12.39□□□□□ -0.43
PTCH1-218ENST00000548945 C19orf60Q96EN9 201 aa12.39□□□□□ -0.43
PTCH1-218ENST00000548945 PDLIM2Q96JY6 352 aa12.39□□□□□ -0.43
PTCH1-218ENST00000548945 NDC1Q9BTX1 674 aa12.39□□□□□ -0.43
PTCH1-218ENST00000548945 SPRTNQ9H040 489 aaPredicted RBP12.39□□□□□ -0.43
PTCH1-218ENST00000548945 ZNF552Q9H707 407 aaPredicted RBP12.39□□□□□ -0.43
PTCH1-218ENST00000548945 ASF1BQ9NVP2 202 aa12.39□□□□□ -0.43
PTCH1-218ENST00000548945 SPHK1Q9NYA1 384 aa12.39□□□□□ -0.43
PTCH1-218ENST00000548945 TFR2Q9UP52 801 aa12.39□□□□□ -0.43
PTCH1-218ENST00000548945 PLCL2Q9UPR0 1127 aa12.39□□□□□ -0.43
PTCH1-218ENST00000548945 GOLGA6L9A6NEM1 432 aa12.38□□□□□ -0.43
PTCH1-218ENST00000548945 BHMG1C9JSJ3 638 aaPredicted RBP12.38□□□□□ -0.43
PTCH1-218ENST00000548945 AGPSO00116 658 aa12.38□□□□□ -0.43
PTCH1-218ENST00000548945 HCRTR1O43613 425 aa12.38□□□□□ -0.43
PTCH1-218ENST00000548945 KRT86O43790 486 aa12.38□□□□□ -0.43
PTCH1-218ENST00000548945 CNOT3O75175 753 aaKnown RBP12.38□□□□□ -0.43
PTCH1-218ENST00000548945 ONECUT2O95948 504 aa12.38□□□□□ -0.43
PTCH1-218ENST00000548945 OR56A5P0C7T3 313 aa12.38□□□□□ -0.43
PTCH1-218ENST00000548945 PRSS56P0CW18 603 aa12.38□□□□□ -0.43
PTCH1-218ENST00000548945 TPBGLP0DKB5 382 aa12.38□□□□□ -0.43
PTCH1-218ENST00000548945 MSNP26038 577 aaKnown RBP12.38□□□□□ -0.43
PTCH1-218ENST00000548945 GCGRP47871 477 aa12.38□□□□□ -0.43
PTCH1-218ENST00000548945 ZNF75DP51815 510 aa12.38□□□□□ -0.43
PTCH1-218ENST00000548945 POU6F1Q14863 301 aa12.38□□□□□ -0.43
PTCH1-218ENST00000548945 NR6A1Q15406 480 aa12.38□□□□□ -0.43
PTCH1-218ENST00000548945 CYP2A13Q16696 494 aa12.38□□□□□ -0.43
PTCH1-218ENST00000548945 DEFB110Q30KQ9 67 aa12.38□□□□□ -0.43
PTCH1-218ENST00000548945 DNAJC21Q5F1R6 531 aaKnown RBP12.38□□□□□ -0.43
PTCH1-218ENST00000548945 C1orf189Q5VU69 101 aa12.38□□□□□ -0.43
PTCH1-218ENST00000548945 Q6ZS92 163 aa12.38□□□□□ -0.43
PTCH1-218ENST00000548945 PPP1R32Q7Z5V6 425 aa12.38□□□□□ -0.43
PTCH1-218ENST00000548945 LINC00523Q86TU6 105 aa12.38□□□□□ -0.43
PTCH1-218ENST00000548945 ZNF655Q8N720 491 aaPredicted RBP12.38□□□□□ -0.43
PTCH1-218ENST00000548945 ALG3Q92685 438 aa12.38□□□□□ -0.43
PTCH1-218ENST00000548945 FKBP10Q96AY3 582 aa12.38□□□□□ -0.43
PTCH1-218ENST00000548945 MRFAP1L1Q96HT8 127 aa12.38□□□□□ -0.43
PTCH1-218ENST00000548945 FAM118BQ9BPY3 351 aa12.38□□□□□ -0.43
PTCH1-218ENST00000548945 ILKAPQ9H0C8 392 aaPredicted RBP12.38□□□□□ -0.43
PTCH1-218ENST00000548945 WDR54Q9H977 334 aa12.38□□□□□ -0.43
PTCH1-218ENST00000548945 ATP13A2Q9NQ11 1180 aa12.38□□□□□ -0.43
PTCH1-218ENST00000548945 ENAMQ9NRM1 1142 aa12.38□□□□□ -0.43
PTCH1-218ENST00000548945 DHCR7Q9UBM7 475 aaKnown RBP12.38□□□□□ -0.43
PTCH1-218ENST00000548945 ERRFI1Q9UJM3 462 aaPredicted RBP12.38□□□□□ -0.43
PTCH1-218ENST00000548945 CDYLQ9Y232 598 aa12.38□□□□□ -0.43
PTCH1-218ENST00000548945 SLC5A6Q9Y289 635 aa12.38□□□□□ -0.43
PTCH1-218ENST00000548945 TDRKHQ9Y2W6 561 aaKnown RBP12.38□□□□□ -0.43
PTCH1-218ENST00000548945 A1L4Q6 167 aa12.37□□□□□ -0.43
PTCH1-218ENST00000548945 CCDC78A2IDD5 438 aa12.37□□□□□ -0.43
PTCH1-218ENST00000548945 ANKUB1A6NFN9 424 aa12.37□□□□□ -0.43
PTCH1-218ENST00000548945 ERI2A8K979 691 aaKnown RBP12.37□□□□□ -0.43
PTCH1-218ENST00000548945 ALBP02768 609 aa12.37□□□□□ -0.43
PTCH1-218ENST00000548945 UMODP07911 640 aa12.37□□□□□ -0.43
PTCH1-218ENST00000548945 PIM1P11309 404 aaPredicted RBP12.37□□□□□ -0.43
PTCH1-218ENST00000548945 TPH1P17752 444 aa12.37□□□□□ -0.43
PTCH1-218ENST00000548945 MMP11P24347 488 aa12.37□□□□□ -0.43
PTCH1-218ENST00000548945 CDC25BP30305 580 aa12.37□□□□□ -0.43
PTCH1-218ENST00000548945 FOXN2P32314 431 aa12.37□□□□□ -0.43
PTCH1-218ENST00000548945 RAB28P51157 221 aa12.37□□□□□ -0.43
PTCH1-218ENST00000548945 ARSFP54793 590 aa12.37□□□□□ -0.43
PTCH1-218ENST00000548945 AIMP2Q13155 320 aaKnown RBP12.37□□□□□ -0.43
PTCH1-218ENST00000548945 SYTL3Q4VX76 610 aa12.37□□□□□ -0.43
PTCH1-218ENST00000548945 YOD1Q5VVQ6 348 aaPredicted RBP12.37□□□□□ -0.43
PTCH1-218ENST00000548945 CISD2Q8N5K1 135 aaKnown RBP12.37□□□□□ -0.43
PTCH1-218ENST00000548945 LRRC57Q8N9N7 239 aa12.37□□□□□ -0.43
PTCH1-218ENST00000548945 FAM71DQ8N9W8 422 aa12.37□□□□□ -0.43
PTCH1-218ENST00000548945 SLC22A18Q96BI1 424 aa12.37□□□□□ -0.43
PTCH1-218ENST00000548945 C5orf34Q96MH7 638 aa12.37□□□□□ -0.43
PTCH1-218ENST00000548945 TTC1Q99614 292 aa12.37□□□□□ -0.43
PTCH1-218ENST00000548945 EURLQ9NYK6 297 aa12.37□□□□□ -0.43
PTCH1-218ENST00000548945 RIMKLBQ9ULI2 386 aa12.37□□□□□ -0.43
PTCH1-218ENST00000548945 PCDHGA10Q9Y5H3 936 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms