RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 KIR2DS3Q14952 304 aa16.27■□□□□ 0.2
VPS29-204ENST00000548259 ZIC1Q15915 447 aa16.27■□□□□ 0.2
VPS29-204ENST00000548259 KAZNQ674X7 775 aa16.27■□□□□ 0.2
VPS29-204ENST00000548259 GFRALQ6UXV0 394 aa16.27■□□□□ 0.2
VPS29-204ENST00000548259 BNC2Q6ZN30 1099 aaPredicted RBP16.27■□□□□ 0.2
VPS29-204ENST00000548259 LINC00696Q6ZRV3 163 aa16.27■□□□□ 0.2
VPS29-204ENST00000548259 TTLL10Q6ZVT0 673 aa16.27■□□□□ 0.2
VPS29-204ENST00000548259 RHOT2Q8IXI1 618 aa16.27■□□□□ 0.2
VPS29-204ENST00000548259 TBC1D21Q8IYX1 336 aa16.27■□□□□ 0.2
VPS29-204ENST00000548259 ZNF808Q8N4W9 903 aaPredicted RBP16.27■□□□□ 0.2
VPS29-204ENST00000548259 SLC35G2Q8TBE7 412 aa16.27■□□□□ 0.2
VPS29-204ENST00000548259 FICDQ9BVA6 458 aa16.27■□□□□ 0.2
VPS29-204ENST00000548259 INTS7Q9NVH2 962 aaKnown RBP16.27■□□□□ 0.2
VPS29-204ENST00000548259 EURLQ9NYK6 297 aa16.27■□□□□ 0.2
VPS29-204ENST00000548259 SAE1Q9UBE0 346 aaPredicted RBP16.27■□□□□ 0.2
VPS29-204ENST00000548259 ITGB1BP2Q9UKP3 347 aa16.27■□□□□ 0.2
VPS29-204ENST00000548259 AAR2Q9Y312 384 aaKnown RBP16.27■□□□□ 0.2
VPS29-204ENST00000548259 CROCCQ5TZA2 2017 aa16.27■□□□□ 0.2
VPS29-204ENST00000548259 TRAV17A0A0B4J275 112 aa16.26■□□□□ 0.19
VPS29-204ENST00000548259 TRGV8A0A0C4DH27 118 aa16.26■□□□□ 0.19
VPS29-204ENST00000548259 SOCS6O14544 535 aa16.26■□□□□ 0.19
VPS29-204ENST00000548259 LIN7AO14910 233 aaPredicted RBP16.26■□□□□ 0.19
VPS29-204ENST00000548259 PCDH17O14917 1159 aa16.26■□□□□ 0.19
VPS29-204ENST00000548259 UQCRHP07919 91 aa16.26■□□□□ 0.19
VPS29-204ENST00000548259 MYBL2P10244 700 aa16.26■□□□□ 0.19
VPS29-204ENST00000548259 TNNT1P13805 278 aa16.26■□□□□ 0.19
VPS29-204ENST00000548259 HTR1EP28566 365 aa16.26■□□□□ 0.19
VPS29-204ENST00000548259 PDHA2P29803 388 aa16.26■□□□□ 0.19
VPS29-204ENST00000548259 CARSP49589 748 aaKnown RBP16.26■□□□□ 0.19
VPS29-204ENST00000548259 CASP6P55212 293 aa16.26■□□□□ 0.19
VPS29-204ENST00000548259 XIAPP98170 497 aa16.26■□□□□ 0.19
VPS29-204ENST00000548259 PLOD1Q02809 727 aaPredicted RBP16.26■□□□□ 0.19
VPS29-204ENST00000548259 RBPJQ06330 500 aa16.26■□□□□ 0.19
VPS29-204ENST00000548259 NKG7Q16617 165 aa16.26■□□□□ 0.19
VPS29-204ENST00000548259 KIRREL2Q6UWL6 708 aa16.26■□□□□ 0.19
VPS29-204ENST00000548259 TMEM207Q6UWW9 146 aa16.26■□□□□ 0.19
VPS29-204ENST00000548259 MFSD7Q6UXD7 560 aa16.26■□□□□ 0.19
VPS29-204ENST00000548259 MRGPRGQ86SM5 289 aa16.26■□□□□ 0.19
VPS29-204ENST00000548259 TMTC1Q8IUR5 882 aa16.26■□□□□ 0.19
VPS29-204ENST00000548259 DNAJC22Q8N4W6 341 aa16.26■□□□□ 0.19
VPS29-204ENST00000548259 CCDC110Q8TBZ0 833 aa16.26■□□□□ 0.19
VPS29-204ENST00000548259 NR4A3Q92570 626 aa16.26■□□□□ 0.19
VPS29-204ENST00000548259 SLC22A18Q96BI1 424 aa16.26■□□□□ 0.19
VPS29-204ENST00000548259 PPP1R2P1Q96PQ5 205 aa16.26■□□□□ 0.19
VPS29-204ENST00000548259 PACSIN1Q9BY11 444 aa16.26■□□□□ 0.19
VPS29-204ENST00000548259 GBA3Q9H227 469 aa16.26■□□□□ 0.19
VPS29-204ENST00000548259 SLC26A1Q9H2B4 701 aa16.26■□□□□ 0.19
VPS29-204ENST00000548259 TDRKHQ9Y2W6 561 aaKnown RBP16.26■□□□□ 0.19
VPS29-204ENST00000548259 HS3ST3B1Q9Y662 390 aa16.26■□□□□ 0.19
VPS29-204ENST00000548259 PCSK5Q92824 1860 aa16.26■□□□□ 0.19
VPS29-204ENST00000548259 F8W8V4 182 aa16.25■□□□□ 0.19
VPS29-204ENST00000548259 SPOPO43791 374 aa16.25■□□□□ 0.19
VPS29-204ENST00000548259 ALOX12BO75342 701 aa16.25■□□□□ 0.19
VPS29-204ENST00000548259 USP1O94782 785 aa16.25■□□□□ 0.19
VPS29-204ENST00000548259 AP2A2O94973 939 aa16.25■□□□□ 0.19
VPS29-204ENST00000548259 CRYABP02511 175 aaKnown RBP16.25■□□□□ 0.19
VPS29-204ENST00000548259 FTH1P02794 183 aa16.25■□□□□ 0.19
VPS29-204ENST00000548259 FDXRP22570 491 aa16.25■□□□□ 0.19
VPS29-204ENST00000548259 CDKN2BP42772 138 aa16.25■□□□□ 0.19
VPS29-204ENST00000548259 UBASH3AP57075 661 aa16.25■□□□□ 0.19
VPS29-204ENST00000548259 KCNK10P57789 538 aa16.25■□□□□ 0.19
VPS29-204ENST00000548259 FOXL2P58012 376 aa16.25■□□□□ 0.19
VPS29-204ENST00000548259 TMPRSS15P98073 1019 aa16.25■□□□□ 0.19
VPS29-204ENST00000548259 GRM7Q14831 915 aa16.25■□□□□ 0.19
VPS29-204ENST00000548259 ZNF630Q2M218 657 aaPredicted RBP16.25■□□□□ 0.19
VPS29-204ENST00000548259 ZC3H12BQ5HYM0 836 aaKnown RBP16.25■□□□□ 0.19
VPS29-204ENST00000548259 TCTE1Q5JU00 501 aa16.25■□□□□ 0.19
VPS29-204ENST00000548259 TAS2R42Q7RTR8 314 aa16.25■□□□□ 0.19
VPS29-204ENST00000548259 OR5AR1Q8NGP9 310 aa16.25■□□□□ 0.19
VPS29-204ENST00000548259 ITLN2Q8WWU7 325 aaPredicted RBP16.25■□□□□ 0.19
VPS29-204ENST00000548259 QKIQ96PU8 341 aaKnown RBP eCLIP16.25■□□□□ 0.191e-6■■■■■ 30.1
VPS29-204ENST00000548259 TRIM56Q9BRZ2 755 aaKnown RBP16.25■□□□□ 0.19
VPS29-204ENST00000548259 FAM96AQ9H5X1 160 aa16.25■□□□□ 0.19
VPS29-204ENST00000548259 FEZ2Q9UHY8 353 aaPredicted RBP16.25■□□□□ 0.19
VPS29-204ENST00000548259 NENFQ9UMX5 172 aa16.25■□□□□ 0.19
VPS29-204ENST00000548259 ADGRG4Q8IZF6 3080 aa16.25■□□□□ 0.19
VPS29-204ENST00000548259 SETD2Q9BYW2 2564 aaPredicted RBP16.25■□□□□ 0.19
VPS29-204ENST00000548259 IGLV3-16A0A075B6K0 115 aa16.24■□□□□ 0.19
VPS29-204ENST00000548259 CCL21O00585 134 aa16.24■□□□□ 0.19
VPS29-204ENST00000548259 DSCR3O14972 297 aa16.24■□□□□ 0.19
VPS29-204ENST00000548259 HCRTR1O43613 425 aa16.24■□□□□ 0.19
VPS29-204ENST00000548259 AKR1B10O60218 316 aa16.24■□□□□ 0.19
VPS29-204ENST00000548259 STK10O94804 968 aaKnown RBP16.24■□□□□ 0.19
VPS29-204ENST00000548259 AP2A1O95782 977 aa16.24■□□□□ 0.19
VPS29-204ENST00000548259 ONECUT2O95948 504 aa16.24■□□□□ 0.19
VPS29-204ENST00000548259 HPP00738 406 aa16.24■□□□□ 0.19
VPS29-204ENST00000548259 PECAM1P16284 738 aaPredicted RBP16.24■□□□□ 0.19
VPS29-204ENST00000548259 ACRV1P26436 265 aa16.24■□□□□ 0.19
VPS29-204ENST00000548259 FAM214AQ32MH5 1076 aa16.24■□□□□ 0.19
VPS29-204ENST00000548259 SYTL3Q4VX76 610 aa16.24■□□□□ 0.19
VPS29-204ENST00000548259 TFDP3Q5H9I0 405 aa16.24■□□□□ 0.19
VPS29-204ENST00000548259 XKRXQ6PP77 449 aa16.24■□□□□ 0.19
VPS29-204ENST00000548259 RANBP10Q6VN20 620 aa16.24■□□□□ 0.19
VPS29-204ENST00000548259 MCATQ8IVS2 390 aaKnown RBP16.24■□□□□ 0.19
VPS29-204ENST00000548259 KBTBD2Q8IY47 623 aa16.24■□□□□ 0.19
VPS29-204ENST00000548259 TTC29Q8NA56 475 aaPredicted RBP16.24■□□□□ 0.19
VPS29-204ENST00000548259 OR11G2Q8NGC1 345 aa16.24■□□□□ 0.19
VPS29-204ENST00000548259 OR13C4Q8NGS5 318 aa16.24■□□□□ 0.19
VPS29-204ENST00000548259 OR5K2Q8NHB8 316 aa16.24■□□□□ 0.19
VPS29-204ENST00000548259 SUN3Q8TAQ9 357 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms