RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 ZNF75DP51815 510 aa8.18□□□□□ -1.1
USP28-215ENST00000545608 VAV2P52735 878 aa8.18□□□□□ -1.1
USP28-215ENST00000545608 TERF1P54274 439 aa8.18□□□□□ -1.1
USP28-215ENST00000545608 WDR4P57081 412 aaKnown RBP8.18□□□□□ -1.1
USP28-215ENST00000545608 BRD3Q15059 726 aa8.18□□□□□ -1.1
USP28-215ENST00000545608 NCF4Q15080 339 aa8.18□□□□□ -1.1
USP28-215ENST00000545608 ZIC1Q15915 447 aa8.18□□□□□ -1.1
USP28-215ENST00000545608 ZNF449Q6P9G9 518 aa8.18□□□□□ -1.1
USP28-215ENST00000545608 UNC5AQ6ZN44 842 aa8.18□□□□□ -1.1
USP28-215ENST00000545608 MTERF4Q7Z6M4 381 aaKnown RBP8.18□□□□□ -1.1
USP28-215ENST00000545608 GALNT11Q8NCW6 608 aa8.18□□□□□ -1.1
USP28-215ENST00000545608 OR5AR1Q8NGP9 310 aa8.18□□□□□ -1.1
USP28-215ENST00000545608 FLVCR1-AS1Q8TAF5 88 aa8.18□□□□□ -1.1
USP28-215ENST00000545608 SLC35B2Q8TB61 432 aa8.18□□□□□ -1.1
USP28-215ENST00000545608 LRRC45Q96CN5 670 aa8.18□□□□□ -1.1
USP28-215ENST00000545608 ITPKCQ96DU7 683 aa8.18□□□□□ -1.1
USP28-215ENST00000545608 OR2A14Q96R47 310 aa8.18□□□□□ -1.1
USP28-215ENST00000545608 TMEM121Q9BTD3 319 aa8.18□□□□□ -1.1
USP28-215ENST00000545608 NUDT9Q9BW91 350 aa8.18□□□□□ -1.1
USP28-215ENST00000545608 SLC7A5P2Q9GIP4 190 aa8.18□□□□□ -1.1
USP28-215ENST00000545608 SPRTNQ9H040 489 aaPredicted RBP8.18□□□□□ -1.1
USP28-215ENST00000545608 LRRC40Q9H9A6 602 aa8.18□□□□□ -1.1
USP28-215ENST00000545608 VPS37BQ9H9H4 285 aa8.18□□□□□ -1.1
USP28-215ENST00000545608 SPHK1Q9NYA1 384 aa8.18□□□□□ -1.1
USP28-215ENST00000545608 LUZP4Q9P127 313 aa8.18□□□□□ -1.1
USP28-215ENST00000545608 AMFRQ9UKV5 643 aa8.18□□□□□ -1.1
USP28-215ENST00000545608 VPS4AQ9UN37 437 aa8.18□□□□□ -1.1
USP28-215ENST00000545608 PACSIN2Q9UNF0 486 aaPredicted RBP8.18□□□□□ -1.1
USP28-215ENST00000545608 R3HDM2Q9Y2K5 976 aaKnown RBP8.18□□□□□ -1.1
USP28-215ENST00000545608 ZNF451Q9Y4E5 1061 aa8.18□□□□□ -1.1
USP28-215ENST00000545608 TNRC6AQ8NDV7 1962 aaKnown RBP8.17□□□□□ -1.1
USP28-215ENST00000545608 SEC16AO15027 2179 aa8.17□□□□□ -1.1
USP28-215ENST00000545608 SLC5A10A0PJK1 596 aa8.17□□□□□ -1.1
USP28-215ENST00000545608 CCDC162PA2VCL2 907 aa8.17□□□□□ -1.1
USP28-215ENST00000545608 GOLGA6L9A6NEM1 432 aa8.17□□□□□ -1.1
USP28-215ENST00000545608 MROH6A6NGR9 719 aa8.17□□□□□ -1.1
USP28-215ENST00000545608 LIN7AO14910 233 aaPredicted RBP8.17□□□□□ -1.1
USP28-215ENST00000545608 PSMD3O43242 534 aa8.17□□□□□ -1.1
USP28-215ENST00000545608 KLF7O75840 302 aaPredicted RBP8.17□□□□□ -1.1
USP28-215ENST00000545608 AP2A1O95782 977 aa8.17□□□□□ -1.1
USP28-215ENST00000545608 FTCDO95954 541 aa8.17□□□□□ -1.1
USP28-215ENST00000545608 CHRM5P08912 532 aaPredicted RBP8.17□□□□□ -1.1
USP28-215ENST00000545608 GSTM1P09488 218 aa8.17□□□□□ -1.1
USP28-215ENST00000545608 UGT2B7P16662 529 aa8.17□□□□□ -1.1
USP28-215ENST00000545608 AGXTP21549 392 aa8.17□□□□□ -1.1
USP28-215ENST00000545608 MSNP26038 577 aaKnown RBP8.17□□□□□ -1.1
USP28-215ENST00000545608 NSG1P42857 185 aa8.17□□□□□ -1.1
USP28-215ENST00000545608 FOXL2P58012 376 aa8.17□□□□□ -1.1
USP28-215ENST00000545608 RELBQ01201 579 aa8.17□□□□□ -1.1
USP28-215ENST00000545608 GSTM4Q03013 218 aa8.17□□□□□ -1.1
USP28-215ENST00000545608 KLF1Q13351 362 aaPredicted RBP8.17□□□□□ -1.1
USP28-215ENST00000545608 RAPSNQ13702 412 aa8.17□□□□□ -1.1
USP28-215ENST00000545608 ATP1A4Q13733 1029 aa8.17□□□□□ -1.1
USP28-215ENST00000545608 ITIH4Q14624 930 aa8.17□□□□□ -1.1
USP28-215ENST00000545608 INPP5JQ15735 1006 aaPredicted RBP8.17□□□□□ -1.1
USP28-215ENST00000545608 DEFB110Q30KQ9 67 aa8.17□□□□□ -1.1
USP28-215ENST00000545608 CCDC38Q502W7 563 aa8.17□□□□□ -1.1
USP28-215ENST00000545608 PRR30Q53SZ7 412 aaPredicted RBP8.17□□□□□ -1.1
USP28-215ENST00000545608 C1orf189Q5VU69 101 aa8.17□□□□□ -1.1
USP28-215ENST00000545608 MLIPQ5VWP3 458 aa8.17□□□□□ -1.1
USP28-215ENST00000545608 HIST2H2BCQ6DN03 193 aa8.17□□□□□ -1.1
USP28-215ENST00000545608 TMEM214Q6NUQ4 689 aaKnown RBP8.17□□□□□ -1.1
USP28-215ENST00000545608 JMJD6Q6NYC1 403 aaPredicted RBP8.17□□□□□ -1.1
USP28-215ENST00000545608 SPESP1Q6UW49 350 aa8.17□□□□□ -1.1
USP28-215ENST00000545608 MED25Q71SY5 747 aa8.17□□□□□ -1.1
USP28-215ENST00000545608 PEX26Q7Z412 305 aa8.17□□□□□ -1.1
USP28-215ENST00000545608 TMEM151BQ8IW70 566 aa8.17□□□□□ -1.1
USP28-215ENST00000545608 FAM20CQ8IXL6 584 aa8.17□□□□□ -1.1
USP28-215ENST00000545608 TBC1D21Q8IYX1 336 aa8.17□□□□□ -1.1
USP28-215ENST00000545608 CYP4X1Q8N118 509 aa8.17□□□□□ -1.1
USP28-215ENST00000545608 RBMXL3Q8N7X1 1067 aaKnown RBP8.17□□□□□ -1.1
USP28-215ENST00000545608 C19orf47Q8N9M1 422 aaKnown RBP8.17□□□□□ -1.1
USP28-215ENST00000545608 TMEM102Q8N9M5 508 aaPredicted RBP8.17□□□□□ -1.1
USP28-215ENST00000545608 LMNTD1Q8N9Z9 388 aa8.17□□□□□ -1.1
USP28-215ENST00000545608 Q8NA96 180 aa8.17□□□□□ -1.1
USP28-215ENST00000545608 GLIS1Q8NBF1 620 aa8.17□□□□□ -1.1
USP28-215ENST00000545608 OR52K1Q8NGK4 314 aa8.17□□□□□ -1.1
USP28-215ENST00000545608 ELMO1Q92556 727 aa8.17□□□□□ -1.1
USP28-215ENST00000545608 TCTN2Q96GX1 697 aa8.17□□□□□ -1.1
USP28-215ENST00000545608 DMRTB1Q96MA1 342 aa8.17□□□□□ -1.1
USP28-215ENST00000545608 LRRC4CQ9HCJ2 640 aa8.17□□□□□ -1.1
USP28-215ENST00000545608 SLC2A6Q9UGQ3 507 aa8.17□□□□□ -1.1
USP28-215ENST00000545608 PLAGL1Q9UM63 463 aa8.17□□□□□ -1.1
USP28-215ENST00000545608 ASF1AQ9Y294 204 aa8.17□□□□□ -1.1
USP28-215ENST00000545608 TDRKHQ9Y2W6 561 aaKnown RBP8.17□□□□□ -1.1
USP28-215ENST00000545608 PCDHGB7Q9Y5F8 929 aa8.17□□□□□ -1.1
USP28-215ENST00000545608 LRRK2Q5S007 2527 aa8.17□□□□□ -1.1
USP28-215ENST00000545608 A0A0J9YY10 115 aa8.16□□□□□ -1.1
USP28-215ENST00000545608 C9J4A7 227 aa8.16□□□□□ -1.1
USP28-215ENST00000545608 MASP2O00187 686 aa8.16□□□□□ -1.1
USP28-215ENST00000545608 OR1I1O60431 355 aa8.16□□□□□ -1.1
USP28-215ENST00000545608 DPM1O60762 260 aa8.16□□□□□ -1.1
USP28-215ENST00000545608 CNOT3O75175 753 aaKnown RBP8.16□□□□□ -1.1
USP28-215ENST00000545608 SEMA7AO75326 666 aa8.16□□□□□ -1.1
USP28-215ENST00000545608 ZNF189O75820 626 aaPredicted RBP8.16□□□□□ -1.1
USP28-215ENST00000545608 OR2B3O76000 313 aa8.16□□□□□ -1.1
USP28-215ENST00000545608 IPO7O95373 1038 aaKnown RBP8.16□□□□□ -1.1
USP28-215ENST00000545608 GOT2P00505 430 aaKnown RBP8.16□□□□□ -1.1
USP28-215ENST00000545608 FTH1P02794 183 aa8.16□□□□□ -1.1
USP28-215ENST00000545608 PTMAP06454 111 aaKnown RBP8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms