RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 WFS1O76024 890 aa11.68□□□□□ -0.54
CLIP1-208ENST00000537004 PRRT3Q5FWE3 981 aa11.68□□□□□ -0.54
CLIP1-208ENST00000537004 Q6ZVL8 140 aa11.68□□□□□ -0.54
CLIP1-208ENST00000537004 RD3Q7Z3Z2 195 aa11.68□□□□□ -0.54
CLIP1-208ENST00000537004 SNX20Q7Z614 316 aa11.68□□□□□ -0.54
CLIP1-208ENST00000537004 PTGR2Q8N8N7 351 aaPredicted RBP11.68□□□□□ -0.54
CLIP1-208ENST00000537004 GIMAP7Q8NHV1 300 aa11.68□□□□□ -0.54
CLIP1-208ENST00000537004 FAM174AQ8TBP5 190 aa11.68□□□□□ -0.54
CLIP1-208ENST00000537004 STAG3L4Q8TBR4 150 aa11.68□□□□□ -0.54
CLIP1-208ENST00000537004 CD200R1Q8TD46 325 aa11.68□□□□□ -0.54
CLIP1-208ENST00000537004 SCRN2Q96FV2 425 aa11.68□□□□□ -0.54
CLIP1-208ENST00000537004 FAR2Q96K12 515 aa11.68□□□□□ -0.54
CLIP1-208ENST00000537004 LYSMD1Q96S90 227 aa11.68□□□□□ -0.54
CLIP1-208ENST00000537004 APOOQ9BUR5 198 aa11.68□□□□□ -0.54
CLIP1-208ENST00000537004 LGR4Q9BXB1 951 aa11.68□□□□□ -0.54
CLIP1-208ENST00000537004 MMADHCQ9H3L0 296 aaPredicted RBP11.68□□□□□ -0.54
CLIP1-208ENST00000537004 TNFRSF12AQ9NP84 129 aa11.68□□□□□ -0.54
CLIP1-208ENST00000537004 IL26Q9NPH9 171 aa11.68□□□□□ -0.54
CLIP1-208ENST00000537004 APPL1Q9UKG1 709 aa11.68□□□□□ -0.54
CLIP1-208ENST00000537004 IKZF3Q9UKT9 509 aa11.68□□□□□ -0.54
CLIP1-208ENST00000537004 RNF112Q9ULX5 631 aa11.68□□□□□ -0.54
CLIP1-208ENST00000537004 NBEAQ8NFP9 2946 aa11.68□□□□□ -0.54
CLIP1-208ENST00000537004 CACNA1BQ00975 2339 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 TMEM202A6NGA9 273 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 CDC7O00311 574 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 PRMT5O14744 637 aaPredicted RBP11.67□□□□□ -0.54
CLIP1-208ENST00000537004 DKK1O94907 266 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 TSPAN12O95859 305 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 BPIP17213 487 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 CHRM3P20309 590 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 ITGALP20701 1170 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 VIPR1P32241 457 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 PPARGP37231 505 aaPredicted RBP11.67□□□□□ -0.54
CLIP1-208ENST00000537004 HNRNPKP61978 463 aaKnown RBP eCLIP11.67□□□□□ -0.54
CLIP1-208ENST00000537004 MXRA7P84157 204 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 NFATC2Q13469 925 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 PFKFB4Q16877 469 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 DEFB133Q30KQ1 61 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 DNAL1Q4LDG9 190 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 UNC50Q53HI1 259 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 ENPP7Q6UWV6 458 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 SERPINA9Q86WD7 417 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 ARHGAP24Q8N264 748 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 AFAP1L2Q8N4X5 818 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 OR4C6Q8NH72 309 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 LMX1AQ8TE12 382 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 AGAP11Q8TF27 550 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 CMTM5Q96DZ9 223 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 COQ10AQ96MF6 247 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 MCCC1Q96RQ3 725 aaPredicted RBP11.67□□□□□ -0.54
CLIP1-208ENST00000537004 CCDC28BQ9BUN5 200 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 C1orf21Q9H246 121 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 DENND2DQ9H6A0 471 aaPredicted RBP11.67□□□□□ -0.54
CLIP1-208ENST00000537004 ASB8Q9H765 288 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 MRPL40Q9NQ50 206 aaKnown RBP11.67□□□□□ -0.54
CLIP1-208ENST00000537004 APOBEC3BQ9UH17 382 aaKnown RBP11.67□□□□□ -0.54
CLIP1-208ENST00000537004 CD84Q9UIB8 345 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 FIS1Q9Y3D6 152 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 PCDHB1Q9Y5F3 818 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 GLYATL1P3A0A0U1RQE8 302 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 NPEPPSL1A6NEC2 478 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 SUPT3HB4E1H0 165 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 BTN3A1O00481 513 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 SDHDO14521 159 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 UBFD1O14562 309 aaKnown RBP11.67□□□□□ -0.54
CLIP1-208ENST00000537004 SUPT3HO75486 399 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 SIX3O95343 332 aaPredicted RBP11.67□□□□□ -0.54
CLIP1-208ENST00000537004 TRIM16O95361 564 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 GFAPP14136 432 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 CPOXP36551 454 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 PGM1P36871 562 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 ACADVLP49748 655 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 IL2P60568 153 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 YPEL5P62699 121 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 KLF10Q13118 480 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 NAA25Q14CX7 972 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 AGERQ15109 404 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 TSNQ15631 228 aaKnown RBP11.67□□□□□ -0.54
CLIP1-208ENST00000537004 PROX2Q3B8N5 592 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 LRRC66Q68CR7 880 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 NXNQ6DKJ4 435 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 UGT3A1Q6NUS8 523 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 CRTC1Q6UUV9 634 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 MACC1Q6ZN28 852 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 USP45Q70EL2 814 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 HID1Q8IV36 788 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 PHACTR4Q8IZ21 702 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 CBARPQ8N350 705 aaPredicted RBP11.67□□□□□ -0.54
CLIP1-208ENST00000537004 MAGEC3Q8TD91 643 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 EEF1AKMT1Q8WVE0 214 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 CCDC97Q96F63 343 aaPredicted RBP11.67□□□□□ -0.54
CLIP1-208ENST00000537004 LINGO1Q96FE5 620 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 MAELQ96JY0 434 aaKnown RBP11.67□□□□□ -0.54
CLIP1-208ENST00000537004 LRRC61Q9BV99 259 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 TMEM121BQ9BXQ6 578 aaPredicted RBP11.67□□□□□ -0.54
CLIP1-208ENST00000537004 CLPBQ9H078 707 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 SARS2Q9NP81 518 aaKnown RBP11.67□□□□□ -0.54
CLIP1-208ENST00000537004 PPIL1Q9Y3C6 166 aa11.67□□□□□ -0.54
CLIP1-208ENST00000537004 TRBV5-4A0A0C4DH59 114 aa11.66□□□□□ -0.54
CLIP1-208ENST00000537004 SYCE1LA8MT33 242 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms