RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 IGHEP01854 428 aa10.94□□□□□ -0.66
VPS28-214ENST00000531032 CTSBP07858 339 aa10.94□□□□□ -0.66
VPS28-214ENST00000531032 OR56A5P0C7T3 313 aa10.94□□□□□ -0.66
VPS28-214ENST00000531032 RNF224P0DH78 156 aa10.94□□□□□ -0.66
VPS28-214ENST00000531032 PEBP1P30086 187 aaKnown RBP10.94□□□□□ -0.66
VPS28-214ENST00000531032 FOLR3P41439 243 aa10.94□□□□□ -0.66
VPS28-214ENST00000531032 MRPL49Q13405 166 aaKnown RBP10.94□□□□□ -0.66
VPS28-214ENST00000531032 RAPSNQ13702 412 aa10.94□□□□□ -0.66
VPS28-214ENST00000531032 KIR2DS3Q14952 304 aa10.94□□□□□ -0.66
VPS28-214ENST00000531032 BRD3Q15059 726 aa10.94□□□□□ -0.66
VPS28-214ENST00000531032 SYTL3Q4VX76 610 aa10.94□□□□□ -0.66
VPS28-214ENST00000531032 DCAF10Q5QP82 559 aa10.94□□□□□ -0.66
VPS28-214ENST00000531032 C1orf189Q5VU69 101 aa10.94□□□□□ -0.66
VPS28-214ENST00000531032 MLIPQ5VWP3 458 aa10.94□□□□□ -0.66
VPS28-214ENST00000531032 LYPLAL1Q5VWZ2 237 aa10.94□□□□□ -0.66
VPS28-214ENST00000531032 MRPL14Q6P1L8 145 aaKnown RBP10.94□□□□□ -0.66
VPS28-214ENST00000531032 TLDC1Q6P9B6 456 aa10.94□□□□□ -0.66
VPS28-214ENST00000531032 IGFL3Q6UXB1 125 aa10.94□□□□□ -0.66
VPS28-214ENST00000531032 NAPRTQ6XQN6 538 aa10.94□□□□□ -0.66
VPS28-214ENST00000531032 PEX26Q7Z412 305 aa10.94□□□□□ -0.66
VPS28-214ENST00000531032 DNAJC22Q8N4W6 341 aa10.94□□□□□ -0.66
VPS28-214ENST00000531032 UBL4BQ8N7F7 174 aa10.94□□□□□ -0.66
VPS28-214ENST00000531032 SPC24Q8NBT2 197 aa10.94□□□□□ -0.66
VPS28-214ENST00000531032 ACRBPQ8NEB7 543 aa10.94□□□□□ -0.66
VPS28-214ENST00000531032 FER1L6-AS2Q96M78 137 aa10.94□□□□□ -0.66
VPS28-214ENST00000531032 BAG1Q99933 345 aaPredicted RBP10.94□□□□□ -0.66
VPS28-214ENST00000531032 AP1M1Q9BXS5 423 aa10.94□□□□□ -0.66
VPS28-214ENST00000531032 SLC29A3Q9BZD2 475 aa10.94□□□□□ -0.66
VPS28-214ENST00000531032 IFT80Q9P2H3 777 aaPredicted RBP10.94□□□□□ -0.66
VPS28-214ENST00000531032 DHCR7Q9UBM7 475 aaKnown RBP10.94□□□□□ -0.66
VPS28-214ENST00000531032 GPN3Q9UHW5 284 aaPredicted RBP10.94□□□□□ -0.66
VPS28-214ENST00000531032 PACSIN2Q9UNF0 486 aaPredicted RBP10.94□□□□□ -0.66
VPS28-214ENST00000531032 TDRKHQ9Y2W6 561 aaKnown RBP10.94□□□□□ -0.66
VPS28-214ENST00000531032 PTRH2Q9Y3E5 179 aaKnown RBP10.94□□□□□ -0.66
VPS28-214ENST00000531032 NUP210LQ5VU65 1888 aa10.93□□□□□ -0.66
VPS28-214ENST00000531032 TCRBV7S2A1N4TA0A589 114 aa10.93□□□□□ -0.66
VPS28-214ENST00000531032 HEATR9A2RTY3 570 aa10.93□□□□□ -0.66
VPS28-214ENST00000531032 KDM1AO60341 852 aa10.93□□□□□ -0.66
VPS28-214ENST00000531032 OR1I1O60431 355 aa10.93□□□□□ -0.66
VPS28-214ENST00000531032 SUN1O94901 812 aa10.93□□□□□ -0.66
VPS28-214ENST00000531032 ALPPP05187 535 aa10.93□□□□□ -0.66
VPS28-214ENST00000531032 UMODP07911 640 aa10.93□□□□□ -0.66
VPS28-214ENST00000531032 PKLRP30613 574 aa10.93□□□□□ -0.66
VPS28-214ENST00000531032 GCGRP47871 477 aa10.93□□□□□ -0.66
VPS28-214ENST00000531032 RAB28P51157 221 aa10.93□□□□□ -0.66
VPS28-214ENST00000531032 SOX8P57073 446 aa10.93□□□□□ -0.66
VPS28-214ENST00000531032 ACVR1Q04771 509 aa10.93□□□□□ -0.66
VPS28-214ENST00000531032 CDH17Q12864 832 aa10.93□□□□□ -0.66
VPS28-214ENST00000531032 MYBPC3Q14896 1274 aa10.93□□□□□ -0.66
VPS28-214ENST00000531032 NKAIN1Q4KMZ8 207 aa10.93□□□□□ -0.66
VPS28-214ENST00000531032 CCDC38Q502W7 563 aa10.93□□□□□ -0.66
VPS28-214ENST00000531032 DNAJC21Q5F1R6 531 aaKnown RBP10.93□□□□□ -0.66
VPS28-214ENST00000531032 HIST2H2BCQ6DN03 193 aa10.93□□□□□ -0.66
VPS28-214ENST00000531032 AFTPHQ6ULP2 937 aa10.93□□□□□ -0.66
VPS28-214ENST00000531032 PPP1R32Q7Z5V6 425 aa10.93□□□□□ -0.66
VPS28-214ENST00000531032 GAS2L3Q86XJ1 694 aa10.93□□□□□ -0.66
VPS28-214ENST00000531032 LURAP1LQ8IV03 231 aa10.93□□□□□ -0.66
VPS28-214ENST00000531032 SLC22A15Q8IZD6 547 aa10.93□□□□□ -0.66
VPS28-214ENST00000531032 SYCE1Q8N0S2 351 aa10.93□□□□□ -0.66
VPS28-214ENST00000531032 IQCKQ8N0W5 287 aa10.93□□□□□ -0.66
VPS28-214ENST00000531032 GALNT16Q8N428 558 aa10.93□□□□□ -0.66
VPS28-214ENST00000531032 ZNF655Q8N720 491 aaPredicted RBP10.93□□□□□ -0.66
VPS28-214ENST00000531032 CLEC1AQ8NC01 280 aa10.93□□□□□ -0.66
VPS28-214ENST00000531032 OR52K1Q8NGK4 314 aa10.93□□□□□ -0.66
VPS28-214ENST00000531032 SNRNP40Q96DI7 357 aaKnown RBP10.93□□□□□ -0.66
VPS28-214ENST00000531032 MENTQ9BUN1 341 aa10.93□□□□□ -0.66
VPS28-214ENST00000531032 TXLNGQ9NUQ3 528 aa10.93□□□□□ -0.66
VPS28-214ENST00000531032 P4HTMQ9NXG6 502 aa10.93□□□□□ -0.66
VPS28-214ENST00000531032 NDOR1Q9UHB4 597 aa10.93□□□□□ -0.66
VPS28-214ENST00000531032 RIMKLBQ9ULI2 386 aa10.93□□□□□ -0.66
VPS28-214ENST00000531032 PLAGL1Q9UM63 463 aa10.93□□□□□ -0.66
VPS28-214ENST00000531032 PLCL2Q9UPR0 1127 aa10.93□□□□□ -0.66
VPS28-214ENST00000531032 CDYLQ9Y232 598 aa10.93□□□□□ -0.66
VPS28-214ENST00000531032 B3GNT3Q9Y2A9 372 aa10.93□□□□□ -0.66
VPS28-214ENST00000531032 ANKRD12Q6UB98 2062 aa10.93□□□□□ -0.66
VPS28-214ENST00000531032 DOPEY1Q5JWR5 2465 aa10.92□□□□□ -0.66
VPS28-214ENST00000531032 ISM1B1AKI9 464 aa10.92□□□□□ -0.66
VPS28-214ENST00000531032 F8W8V4 182 aa10.92□□□□□ -0.66
VPS28-214ENST00000531032 PEX12O00623 359 aa10.92□□□□□ -0.66
VPS28-214ENST00000531032 KLHL41O60662 606 aa10.92□□□□□ -0.66
VPS28-214ENST00000531032 IPO13O94829 963 aaKnown RBP10.92□□□□□ -0.66
VPS28-214ENST00000531032 FTCDO95954 541 aa10.92□□□□□ -0.66
VPS28-214ENST00000531032 GOT2P00505 430 aaKnown RBP10.92□□□□□ -0.66
VPS28-214ENST00000531032 MAGP20916 626 aa10.92□□□□□ -0.66
VPS28-214ENST00000531032 CDC25BP30305 580 aa10.92□□□□□ -0.66
VPS28-214ENST00000531032 STIP1P31948 543 aaKnown RBP10.92□□□□□ -0.66
VPS28-214ENST00000531032 CCR7P32248 378 aa10.92□□□□□ -0.66
VPS28-214ENST00000531032 KYNUQ16719 465 aa10.92□□□□□ -0.66
VPS28-214ENST00000531032 EIF2S3LQ2VIR3 472 aaKnown RBP10.92□□□□□ -0.66
VPS28-214ENST00000531032 PLEKHN1Q494U1 663 aaPredicted RBP10.92□□□□□ -0.66
VPS28-214ENST00000531032 TSTD2Q5T7W7 516 aa10.92□□□□□ -0.66
VPS28-214ENST00000531032 ZNF534Q76KX8 674 aa10.92□□□□□ -0.66
VPS28-214ENST00000531032 TAB3Q8N5C8 712 aaPredicted RBP10.92□□□□□ -0.66
VPS28-214ENST00000531032 DNAAF3Q8N9W5 541 aa10.92□□□□□ -0.66
VPS28-214ENST00000531032 LINC01555Q8NAE3 123 aa10.92□□□□□ -0.66
VPS28-214ENST00000531032 HDAC10Q969S8 669 aa10.92□□□□□ -0.66
VPS28-214ENST00000531032 NACC2Q96BF6 587 aa10.92□□□□□ -0.66
VPS28-214ENST00000531032 PTERQ96BW5 349 aa10.92□□□□□ -0.66
VPS28-214ENST00000531032 C19orf60Q96EN9 201 aa10.92□□□□□ -0.66
VPS28-214ENST00000531032 HES6Q96HZ4 224 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms