RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 PCDH8O95206 1070 aa20.16■□□□□ 0.82
VPS28-209ENST00000528142 XRCC1P18887 633 aaPredicted RBP20.16■□□□□ 0.82
VPS28-209ENST00000528142 ME2P23368 584 aa20.16■□□□□ 0.82
VPS28-209ENST00000528142 ITPKAP23677 461 aa20.16■□□□□ 0.82
VPS28-209ENST00000528142 NTSR1P30989 418 aa20.16■□□□□ 0.82
VPS28-209ENST00000528142 BDKRB1P46663 353 aa20.16■□□□□ 0.82
VPS28-209ENST00000528142 PTDSS1P48651 473 aaKnown RBP20.16■□□□□ 0.82
VPS28-209ENST00000528142 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP20.16■□□□□ 0.826e-7■■■■■ 139.2
VPS28-209ENST00000528142 PCYOX1LQ8NBM8 494 aa20.16■□□□□ 0.82
VPS28-209ENST00000528142 FBXO15Q8NCQ5 510 aaPredicted RBP20.16■□□□□ 0.82
VPS28-209ENST00000528142 PROKR1Q8TCW9 393 aa20.16■□□□□ 0.82
VPS28-209ENST00000528142 ATL1Q8WXF7 558 aa20.16■□□□□ 0.82
VPS28-209ENST00000528142 FAM131CQ96AQ9 280 aa20.16■□□□□ 0.82
VPS28-209ENST00000528142 PKP4Q99569 1192 aa20.16■□□□□ 0.82
VPS28-209ENST00000528142 S100A14Q9HCY8 104 aa20.16■□□□□ 0.82
VPS28-209ENST00000528142 STOX2Q9P2F5 926 aaPredicted RBP20.16■□□□□ 0.82
VPS28-209ENST00000528142 STOML1Q9UBI4 398 aa20.16■□□□□ 0.82
VPS28-209ENST00000528142 CD207Q9UJ71 328 aa20.16■□□□□ 0.82
VPS28-209ENST00000528142 CROTQ9UKG9 612 aa20.16■□□□□ 0.82
VPS28-209ENST00000528142 TMEM98Q9Y2Y6 226 aa20.16■□□□□ 0.82
VPS28-209ENST00000528142 PCYT1BQ9Y5K3 369 aaPredicted RBP20.16■□□□□ 0.82
VPS28-209ENST00000528142 KRT6AP02538 564 aa20.16■□□□□ 0.82
VPS28-209ENST00000528142 KRT6BP04259 564 aa20.16■□□□□ 0.82
VPS28-209ENST00000528142 IL12AP29459 219 aa20.16■□□□□ 0.82
VPS28-209ENST00000528142 KRT6CP48668 564 aa20.16■□□□□ 0.82
VPS28-209ENST00000528142 CPSF6Q16630 551 aaKnown RBP eCLIP20.16■□□□□ 0.82
VPS28-209ENST00000528142 IL23RQ5VWK5 629 aa20.16■□□□□ 0.82
VPS28-209ENST00000528142 AGTRAPQ6RW13 159 aa20.16■□□□□ 0.82
VPS28-209ENST00000528142 LAYNQ6UX15 382 aa20.16■□□□□ 0.82
VPS28-209ENST00000528142 HEATR4Q86WZ0 1026 aa20.16■□□□□ 0.82
VPS28-209ENST00000528142 RGL4Q8IZJ4 473 aa20.16■□□□□ 0.82
VPS28-209ENST00000528142 OR2L2Q8NH16 312 aa20.16■□□□□ 0.82
VPS28-209ENST00000528142 KCNV2Q8TDN2 545 aa20.16■□□□□ 0.82
VPS28-209ENST00000528142 SPDL1Q96EA4 605 aa20.16■□□□□ 0.82
VPS28-209ENST00000528142 FOPNLQ96NB1 174 aa20.16■□□□□ 0.82
VPS28-209ENST00000528142 GPATCH1Q9BRR8 931 aaKnown RBP20.16■□□□□ 0.82
VPS28-209ENST00000528142 MKRN2Q9H000 416 aaKnown RBP20.16■□□□□ 0.82
VPS28-209ENST00000528142 ACTL8Q9H568 366 aa20.16■□□□□ 0.82
VPS28-209ENST00000528142 INTS7Q9NVH2 962 aaKnown RBP20.16■□□□□ 0.82
VPS28-209ENST00000528142 CKAP5Q14008 2032 aa20.15■□□□□ 0.82
VPS28-209ENST00000528142 A0A1W2PP18 115 aa20.15■□□□□ 0.82
VPS28-209ENST00000528142 MGAT4DA6NG13 374 aa20.15■□□□□ 0.82
VPS28-209ENST00000528142 ANKRD28O15084 1053 aa20.15■□□□□ 0.82
VPS28-209ENST00000528142 ADAM23O75077 832 aa20.15■□□□□ 0.82
VPS28-209ENST00000528142 C1orf105O95561 183 aa20.15■□□□□ 0.82
VPS28-209ENST00000528142 EGFP01133 1207 aa20.15■□□□□ 0.82
VPS28-209ENST00000528142 PCCBP05166 539 aa20.15■□□□□ 0.82
VPS28-209ENST00000528142 G6PDP11413 515 aa20.15■□□□□ 0.82
VPS28-209ENST00000528142 CCR3P51677 355 aa20.15■□□□□ 0.82
VPS28-209ENST00000528142 AP2B1P63010 937 aa20.15■□□□□ 0.82
VPS28-209ENST00000528142 CDK3Q00526 305 aa20.15■□□□□ 0.82
VPS28-209ENST00000528142 MS4A2Q01362 244 aa20.15■□□□□ 0.82
VPS28-209ENST00000528142 HMGCS1Q01581 520 aa20.15■□□□□ 0.82
VPS28-209ENST00000528142 PLOD1Q02809 727 aaPredicted RBP20.15■□□□□ 0.82
VPS28-209ENST00000528142 SGO1Q5FBB7 561 aa20.15■□□□□ 0.82
VPS28-209ENST00000528142 CRTC3Q6UUV7 619 aa20.15■□□□□ 0.82
VPS28-209ENST00000528142 RNF148Q8N7C7 305 aa20.15■□□□□ 0.82
VPS28-209ENST00000528142 IL17RCQ8NAC3 791 aa20.15■□□□□ 0.82
VPS28-209ENST00000528142 GAS2L1Q99501 681 aaPredicted RBP20.15■□□□□ 0.82
VPS28-209ENST00000528142 SPAG4Q9NPE6 437 aa20.15■□□□□ 0.82
VPS28-209ENST00000528142 ADA2Q9NZK5 511 aa20.15■□□□□ 0.82
VPS28-209ENST00000528142 TMEM181Q9P2C4 612 aa20.15■□□□□ 0.82
VPS28-209ENST00000528142 ZFR2Q9UPR6 939 aaKnown RBP20.15■□□□□ 0.82
VPS28-209ENST00000528142 FAM234BA2RU67 622 aa20.14■□□□□ 0.81
VPS28-209ENST00000528142 ASPDHA6ND91 283 aa20.14■□□□□ 0.81
VPS28-209ENST00000528142 TRIM38O00635 465 aa20.14■□□□□ 0.81
VPS28-209ENST00000528142 ANGPT2O15123 496 aa20.14■□□□□ 0.81
VPS28-209ENST00000528142 RNASEH2AO75792 299 aaKnown RBP20.14■□□□□ 0.81
VPS28-209ENST00000528142 SLC2A4P14672 509 aa20.14■□□□□ 0.81
VPS28-209ENST00000528142 ANPEPP15144 967 aa20.14■□□□□ 0.81
VPS28-209ENST00000528142 IMPA1P29218 277 aa20.14■□□□□ 0.81
VPS28-209ENST00000528142 GNPDA1P46926 289 aa20.14■□□□□ 0.81
VPS28-209ENST00000528142 KCNK10P57789 538 aa20.14■□□□□ 0.81
VPS28-209ENST00000528142 FGL2Q14314 439 aa20.14■□□□□ 0.81
VPS28-209ENST00000528142 SLC44A4Q53GD3 710 aa20.14■□□□□ 0.81
VPS28-209ENST00000528142 CYP20A1Q6UW02 462 aa20.14■□□□□ 0.81
VPS28-209ENST00000528142 KBTBD6Q86V97 674 aa20.14■□□□□ 0.81
VPS28-209ENST00000528142 THOC6Q86W42 341 aaKnown RBP20.14■□□□□ 0.81
VPS28-209ENST00000528142 OR56A3Q8NH54 315 aa20.14■□□□□ 0.81
VPS28-209ENST00000528142 HM13Q8TCT9 377 aa20.14■□□□□ 0.81
VPS28-209ENST00000528142 NRG4Q8WWG1 115 aa20.14■□□□□ 0.81
VPS28-209ENST00000528142 CDX2Q99626 313 aaPredicted RBP20.14■□□□□ 0.81
VPS28-209ENST00000528142 LGR4Q9BXB1 951 aa20.14■□□□□ 0.81
VPS28-209ENST00000528142 TRPV5Q9NQA5 729 aa20.14■□□□□ 0.81
VPS28-209ENST00000528142 MBNL1Q9NR56 388 aaKnown RBP20.14■□□□□ 0.81
VPS28-209ENST00000528142 CD300AQ9UGN4 299 aa20.14■□□□□ 0.81
VPS28-209ENST00000528142 A0A1W2PQF6 199 aa20.13■□□□□ 0.81
VPS28-209ENST00000528142 FXYD1O00168 92 aa20.13■□□□□ 0.81
VPS28-209ENST00000528142 ACOT8O14734 319 aa20.13■□□□□ 0.81
VPS28-209ENST00000528142 SLC16A8O95907 504 aa20.13■□□□□ 0.81
VPS28-209ENST00000528142 PDYNP01213 254 aa20.13■□□□□ 0.81
VPS28-209ENST00000528142 TEAD1P28347 426 aa20.13■□□□□ 0.81
VPS28-209ENST00000528142 POLR2JP52435 117 aaKnown RBP20.13■□□□□ 0.81
VPS28-209ENST00000528142 PCDH1Q08174 1060 aa20.13■□□□□ 0.81
VPS28-209ENST00000528142 SLC26A7Q8TE54 656 aa20.13■□□□□ 0.81
VPS28-209ENST00000528142 MAGEB10Q96LZ2 347 aaPredicted RBP20.13■□□□□ 0.81
VPS28-209ENST00000528142 TEX101Q9BY14 249 aa20.13■□□□□ 0.81
VPS28-209ENST00000528142 ACPTQ9BZG2 426 aa20.13■□□□□ 0.81
VPS28-209ENST00000528142 DPEP2Q9H4A9 486 aa20.13■□□□□ 0.81
VPS28-209ENST00000528142 MRPL40Q9NQ50 206 aaKnown RBP20.13■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms