RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 LINGO1Q96FE5 620 aa9.77□□□□□ -0.85
NUP54-203ENST00000504173 FERD3LQ96RJ6 166 aa9.77□□□□□ -0.85
NUP54-203ENST00000504173 DHRS4Q9BTZ2 278 aa9.77□□□□□ -0.85
NUP54-203ENST00000504173 TRIM4Q9C037 500 aa9.77□□□□□ -0.85
NUP54-203ENST00000504173 TRIT1Q9H3H1 467 aaKnown RBP9.77□□□□□ -0.85
NUP54-203ENST00000504173 MVB12BQ9H7P6 319 aa9.77□□□□□ -0.85
NUP54-203ENST00000504173 PPCSQ9HAB8 311 aa9.77□□□□□ -0.85
NUP54-203ENST00000504173 POPDC3Q9HBV1 291 aa9.77□□□□□ -0.85
NUP54-203ENST00000504173 SYTL2Q9HCH5 934 aa9.77□□□□□ -0.85
NUP54-203ENST00000504173 GPAMQ9HCL2 828 aa9.77□□□□□ -0.85
NUP54-203ENST00000504173 ARGLU1Q9NWB6 273 aaPredicted RBP9.77□□□□□ -0.85
NUP54-203ENST00000504173 LRIT1Q9P2V4 623 aa9.77□□□□□ -0.85
NUP54-203ENST00000504173 PSMC3IPQ9P2W1 217 aaPredicted RBP9.77□□□□□ -0.85
NUP54-203ENST00000504173 RUVBL2Q9Y230 463 aaKnown RBP9.77□□□□□ -0.85
NUP54-203ENST00000504173 RNF215Q9Y6U7 377 aa9.77□□□□□ -0.85
NUP54-203ENST00000504173 COLEC10Q9Y6Z7 277 aa9.77□□□□□ -0.85
NUP54-203ENST00000504173 U3KQA8 63 aa9.77□□□□□ -0.85
NUP54-203ENST00000504173 PRAMEF33A0A0G2JMD5 474 aa9.76□□□□□ -0.85
NUP54-203ENST00000504173 IQANK1A0A1B0GTG1 560 aa9.76□□□□□ -0.85
NUP54-203ENST00000504173 HMX2A2RU54 273 aa9.76□□□□□ -0.85
NUP54-203ENST00000504173 EME2A4GXA9 379 aaPredicted RBP9.76□□□□□ -0.85
NUP54-203ENST00000504173 CLEC18AA5D8T8 446 aa9.76□□□□□ -0.85
NUP54-203ENST00000504173 TRIM49D1C9J1S8 452 aa9.76□□□□□ -0.85
NUP54-203ENST00000504173 PPM1DO15297 605 aa9.76□□□□□ -0.85
NUP54-203ENST00000504173 NUDT21O43809 227 aaKnown RBP9.76□□□□□ -0.85
NUP54-203ENST00000504173 RPN2P04844 631 aa9.76□□□□□ -0.85
NUP54-203ENST00000504173 SNRPAP09012 282 aaKnown RBP9.76□□□□□ -0.85
NUP54-203ENST00000504173 ACP1P24666 158 aa9.76□□□□□ -0.85
NUP54-203ENST00000504173 CRABP2P29373 138 aa9.76□□□□□ -0.85
NUP54-203ENST00000504173 PPM1FP49593 454 aaPredicted RBP9.76□□□□□ -0.85
NUP54-203ENST00000504173 ACADVLP49748 655 aa9.76□□□□□ -0.85
NUP54-203ENST00000504173 PLCL1Q15111 1095 aa9.76□□□□□ -0.85
NUP54-203ENST00000504173 ZKSCAN8Q15776 578 aaPredicted RBP9.76□□□□□ -0.85
NUP54-203ENST00000504173 CCDC157Q569K6 752 aa9.76□□□□□ -0.85
NUP54-203ENST00000504173 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.76□□□□□ -0.85
NUP54-203ENST00000504173 CLEC18BQ6UXF7 455 aa9.76□□□□□ -0.85
NUP54-203ENST00000504173 UNC5DQ6UXZ4 953 aa9.76□□□□□ -0.85
NUP54-203ENST00000504173 CMC1Q7Z7K0 106 aa9.76□□□□□ -0.85
NUP54-203ENST00000504173 ZNF761Q86XN6 746 aaPredicted RBP9.76□□□□□ -0.85
NUP54-203ENST00000504173 CEP97Q8IW35 865 aa9.76□□□□□ -0.85
NUP54-203ENST00000504173 RBM12BQ8IXT5 1001 aaKnown RBP9.76□□□□□ -0.85
NUP54-203ENST00000504173 TBC1D21Q8IYX1 336 aa9.76□□□□□ -0.85
NUP54-203ENST00000504173 MYO1HQ8N1T3 1032 aa9.76□□□□□ -0.85
NUP54-203ENST00000504173 NKAPQ8N5F7 415 aaKnown RBP9.76□□□□□ -0.85
NUP54-203ENST00000504173 CLEC18CQ8NCF0 446 aa9.76□□□□□ -0.85
NUP54-203ENST00000504173 PHC3Q8NDX5 983 aa9.76□□□□□ -0.85
NUP54-203ENST00000504173 OR5AR1Q8NGP9 310 aa9.76□□□□□ -0.85
NUP54-203ENST00000504173 EEF1AKMT1Q8WVE0 214 aa9.76□□□□□ -0.85
NUP54-203ENST00000504173 SLC38A3Q99624 504 aa9.76□□□□□ -0.85
NUP54-203ENST00000504173 HGH1Q9BTY7 390 aa9.76□□□□□ -0.85
NUP54-203ENST00000504173 SNX15Q9NRS6 342 aa9.76□□□□□ -0.85
NUP54-203ENST00000504173 CTNNAL1Q9UBT7 734 aa9.76□□□□□ -0.85
NUP54-203ENST00000504173 PLAAQ9Y263 795 aa9.76□□□□□ -0.85
NUP54-203ENST00000504173 HEMK1Q9Y5R4 338 aaPredicted RBP9.76□□□□□ -0.85
NUP54-203ENST00000504173 NFS1Q9Y697 457 aa9.76□□□□□ -0.85
NUP54-203ENST00000504173 FBN3Q75N90 2809 aa9.75□□□□□ -0.85
NUP54-203ENST00000504173 TLDC2A0PJX2 215 aa9.75□□□□□ -0.85
NUP54-203ENST00000504173 RASGRF2O14827 1237 aa9.75□□□□□ -0.85
NUP54-203ENST00000504173 ZW10O43264 779 aa9.75□□□□□ -0.85
NUP54-203ENST00000504173 KDM1AO60341 852 aa9.75□□□□□ -0.85
NUP54-203ENST00000504173 CATP04040 527 aaKnown RBP9.75□□□□□ -0.85
NUP54-203ENST00000504173 PNLIPP16233 465 aa9.75□□□□□ -0.85
NUP54-203ENST00000504173 TYK2P29597 1187 aa9.75□□□□□ -0.85
NUP54-203ENST00000504173 MAPK9P45984 424 aa9.75□□□□□ -0.85
NUP54-203ENST00000504173 BDKRB1P46663 353 aa9.75□□□□□ -0.85
NUP54-203ENST00000504173 GPR18Q14330 331 aa9.75□□□□□ -0.85
NUP54-203ENST00000504173 PERM1Q5SV97 790 aa9.75□□□□□ -0.85
NUP54-203ENST00000504173 BEND6Q5SZJ8 279 aaPredicted RBP9.75□□□□□ -0.85
NUP54-203ENST00000504173 TTC23LQ6PF05 361 aa9.75□□□□□ -0.85
NUP54-203ENST00000504173 TMEM207Q6UWW9 146 aa9.75□□□□□ -0.85
NUP54-203ENST00000504173 ATG14Q6ZNE5 492 aa9.75□□□□□ -0.85
NUP54-203ENST00000504173 TMEM26Q6ZUK4 368 aa9.75□□□□□ -0.85
NUP54-203ENST00000504173 ZNF438Q7Z4V0 828 aa9.75□□□□□ -0.85
NUP54-203ENST00000504173 CCDC91Q7Z6B0 441 aa9.75□□□□□ -0.85
NUP54-203ENST00000504173 TBC1D1Q86TI0 1168 aaPredicted RBP9.75□□□□□ -0.85
NUP54-203ENST00000504173 TDRPQ86YL5 185 aa9.75□□□□□ -0.85
NUP54-203ENST00000504173 DCUN1D3Q8IWE4 304 aa9.75□□□□□ -0.85
NUP54-203ENST00000504173 CNPY4Q8N129 248 aa9.75□□□□□ -0.85
NUP54-203ENST00000504173 Q8N9G6 341 aaPredicted RBP9.75□□□□□ -0.85
NUP54-203ENST00000504173 OR5K2Q8NHB8 316 aa9.75□□□□□ -0.85
NUP54-203ENST00000504173 EPS8L3Q8TE67 593 aaKnown RBP9.75□□□□□ -0.85
NUP54-203ENST00000504173 MTBPQ96DY7 904 aa9.75□□□□□ -0.85
NUP54-203ENST00000504173 CCDC3Q9BQI4 270 aa9.75□□□□□ -0.85
NUP54-203ENST00000504173 LDHAL6BQ9BYZ2 381 aaPredicted RBP9.75□□□□□ -0.85
NUP54-203ENST00000504173 ZMYND15Q9H091 742 aa9.75□□□□□ -0.85
NUP54-203ENST00000504173 SYNDIG1Q9H7V2 258 aa9.75□□□□□ -0.85
NUP54-203ENST00000504173 UCK1Q9HA47 277 aa9.75□□□□□ -0.85
NUP54-203ENST00000504173 SLC40A1Q9NP59 571 aa9.75□□□□□ -0.85
NUP54-203ENST00000504173 TBK1Q9UHD2 729 aa9.75□□□□□ -0.85
NUP54-203ENST00000504173 TLK1Q9UKI8 766 aa9.75□□□□□ -0.85
NUP54-203ENST00000504173 TDRKHQ9Y2W6 561 aaKnown RBP9.75□□□□□ -0.85
NUP54-203ENST00000504173 AK5Q9Y6K8 562 aa9.75□□□□□ -0.85
NUP54-203ENST00000504173 SPTBN1Q01082 2364 aaKnown RBP9.75□□□□□ -0.85
NUP54-203ENST00000504173 A0A087X1B8 175 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 UQCRHLA0A096LP55 91 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 A0A096LPK6 155 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 PABPN1LA6NDY0 278 aaKnown RBP9.74□□□□□ -0.85
NUP54-203ENST00000504173 LILRA5A6NI73 299 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 CDH16O75309 829 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 PSIP1O75475 530 aaKnown RBP9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms