RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 C15orf59Q2T9L4 293 aaPredicted RBP3.24□□□□□ -1.89
VPS50-219ENST00000495039 FAM98BQ52LJ0 330 aaKnown RBP3.24□□□□□ -1.89
VPS50-219ENST00000495039 KRT79Q5XKE5 535 aa3.24□□□□□ -1.89
VPS50-219ENST00000495039 PSRC1Q6PGN9 363 aaPredicted RBP3.24□□□□□ -1.89
VPS50-219ENST00000495039 TMED8Q6PL24 325 aaPredicted RBP3.24□□□□□ -1.89
VPS50-219ENST00000495039 ADGRA1Q86SQ6 560 aa3.24□□□□□ -1.89
VPS50-219ENST00000495039 ZNF843Q8N446 348 aa3.24□□□□□ -1.89
VPS50-219ENST00000495039 ZPLD1Q8TCW7 415 aa3.24□□□□□ -1.89
VPS50-219ENST00000495039 DENND2DQ9H6A0 471 aaPredicted RBP3.24□□□□□ -1.89
VPS50-219ENST00000495039 PDE7BQ9NP56 450 aa3.24□□□□□ -1.89
VPS50-219ENST00000495039 WSB2Q9NYS7 404 aaPredicted RBP3.24□□□□□ -1.89
VPS50-219ENST00000495039 MRPL15Q9P015 296 aaKnown RBP3.24□□□□□ -1.89
VPS50-219ENST00000495039 LARSQ9P2J5 1176 aaKnown RBP3.24□□□□□ -1.89
VPS50-219ENST00000495039 EPHA6Q9UF33 1036 aa3.24□□□□□ -1.89
VPS50-219ENST00000495039 HACL1Q9UJ83 578 aa3.24□□□□□ -1.89
VPS50-219ENST00000495039 ZNF148Q9UQR1 794 aa3.24□□□□□ -1.89
VPS50-219ENST00000495039 ADAMDEC1O15204 470 aa3.23□□□□□ -1.89
VPS50-219ENST00000495039 VPREB1P12018 145 aa3.23□□□□□ -1.89
VPS50-219ENST00000495039 GJA1P17302 382 aa3.23□□□□□ -1.89
VPS50-219ENST00000495039 TRIM21P19474 475 aaKnown RBP3.23□□□□□ -1.89
VPS50-219ENST00000495039 NNMTP40261 264 aa3.23□□□□□ -1.89
VPS50-219ENST00000495039 MATR3P43243 847 aaKnown RBP eCLIP3.23□□□□□ -1.89
VPS50-219ENST00000495039 LMAN1P49257 510 aa3.23□□□□□ -1.89
VPS50-219ENST00000495039 DHRS7BQ6IAN0 325 aaPredicted RBP3.23□□□□□ -1.89
VPS50-219ENST00000495039 FAM109BQ6ICB4 259 aaPredicted RBP3.23□□□□□ -1.89
VPS50-219ENST00000495039 ENOSF1Q7L5Y1 443 aa3.23□□□□□ -1.89
VPS50-219ENST00000495039 LDB1Q86U70 411 aaPredicted RBP3.23□□□□□ -1.89
VPS50-219ENST00000495039 LINC00346Q8IVM7 164 aa3.23□□□□□ -1.89
VPS50-219ENST00000495039 LSMEM2Q8N112 164 aa3.23□□□□□ -1.89
VPS50-219ENST00000495039 PRPF31Q8WWY3 499 aaKnown RBP3.23□□□□□ -1.89
VPS50-219ENST00000495039 SMPDL3BQ92485 455 aa3.23□□□□□ -1.89
VPS50-219ENST00000495039 RASL10AQ92737 203 aa3.23□□□□□ -1.89
VPS50-219ENST00000495039 SEMA4DQ92854 862 aa3.23□□□□□ -1.89
VPS50-219ENST00000495039 SLC22A18Q96BI1 424 aa3.23□□□□□ -1.89
VPS50-219ENST00000495039 CDRT15Q96T59 188 aa3.23□□□□□ -1.89
VPS50-219ENST00000495039 CLEC7AQ9BXN2 247 aa3.23□□□□□ -1.89
VPS50-219ENST00000495039 SPATC1LQ9H0A9 340 aa3.23□□□□□ -1.89
VPS50-219ENST00000495039 UPF3AQ9H1J1 476 aaKnown RBP3.23□□□□□ -1.89
VPS50-219ENST00000495039 MMP27Q9H306 513 aa3.23□□□□□ -1.89
VPS50-219ENST00000495039 KCNK15Q9H427 330 aa3.23□□□□□ -1.89
VPS50-219ENST00000495039 CHORDC1Q9UHD1 332 aaPredicted RBP3.23□□□□□ -1.89
VPS50-219ENST00000495039 ZWINTO95229 277 aa3.22□□□□□ -1.89
VPS50-219ENST00000495039 LIMK2P53671 638 aa3.22□□□□□ -1.89
VPS50-219ENST00000495039 SIRPAP78324 504 aa3.22□□□□□ -1.89
VPS50-219ENST00000495039 PLA2G7Q13093 441 aa3.22□□□□□ -1.89
VPS50-219ENST00000495039 MELKQ14680 651 aa3.22□□□□□ -1.89
VPS50-219ENST00000495039 P2RY6Q15077 328 aa3.22□□□□□ -1.89
VPS50-219ENST00000495039 GCNT6Q5T4J0 391 aa3.22□□□□□ -1.89
VPS50-219ENST00000495039 MFSD4BQ5TF39 518 aa3.22□□□□□ -1.89
VPS50-219ENST00000495039 ADALQ6DHV7 355 aa3.22□□□□□ -1.89
VPS50-219ENST00000495039 IL27RAQ6UWB1 636 aa3.22□□□□□ -1.89
VPS50-219ENST00000495039 TMCO3Q6UWJ1 677 aa3.22□□□□□ -1.89
VPS50-219ENST00000495039 HAUS6Q7Z4H7 955 aa3.22□□□□□ -1.89
VPS50-219ENST00000495039 DNAAF5Q86Y56 855 aa3.22□□□□□ -1.89
VPS50-219ENST00000495039 GPALPP1Q8IXQ4 340 aa3.22□□□□□ -1.89
VPS50-219ENST00000495039 RAB42Q8N4Z0 105 aa3.22□□□□□ -1.89
VPS50-219ENST00000495039 SYT2Q8N9I0 419 aaPredicted RBP3.22□□□□□ -1.89
VPS50-219ENST00000495039 FAM81BQ96LP2 452 aa3.22□□□□□ -1.89
VPS50-219ENST00000495039 NSMCE3Q96MG7 304 aa3.22□□□□□ -1.89
VPS50-219ENST00000495039 SLC22A12Q96S37 553 aa3.22□□□□□ -1.89
VPS50-219ENST00000495039 SOSTQ9BQB4 213 aa3.22□□□□□ -1.89
VPS50-219ENST00000495039 PPIL3Q9H2H8 161 aaKnown RBP3.22□□□□□ -1.89
VPS50-219ENST00000495039 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP3.22□□□□□ -1.89
VPS50-219ENST00000495039 RNF186Q9NXI6 227 aa3.22□□□□□ -1.89
VPS50-219ENST00000495039 FLRT3Q9NZU0 649 aa3.22□□□□□ -1.89
VPS50-219ENST00000495039 PPIEQ9UNP9 301 aaKnown RBP3.22□□□□□ -1.89
VPS50-219ENST00000495039 PASKQ96RG2 1323 aa3.21□□□□□ -1.89
VPS50-219ENST00000495039 LOC102723996A0A087X1L8 192 aa3.21□□□□□ -1.9
VPS50-219ENST00000495039 GPR75-ASB3A0A0A6YYF3 556 aa3.21□□□□□ -1.9
VPS50-219ENST00000495039 OR6C76A6NM76 312 aa3.21□□□□□ -1.9
VPS50-219ENST00000495039 IPO8O15397 1037 aaKnown RBP3.21□□□□□ -1.9
VPS50-219ENST00000495039 SSX4O60224 188 aa3.21□□□□□ -1.9
VPS50-219ENST00000495039 PRAMEF11O60813 436 aa3.21□□□□□ -1.9
VPS50-219ENST00000495039 ERAL1O75616 437 aaKnown RBP3.21□□□□□ -1.9
VPS50-219ENST00000495039 PGM3O95394 542 aa3.21□□□□□ -1.9
VPS50-219ENST00000495039 PSMC4P43686 418 aa3.21□□□□□ -1.9
VPS50-219ENST00000495039 THOP1P52888 689 aa3.21□□□□□ -1.9
VPS50-219ENST00000495039 IFI35P80217 286 aaPredicted RBP3.21□□□□□ -1.9
VPS50-219ENST00000495039 BAATQ14032 418 aaPredicted RBP3.21□□□□□ -1.9
VPS50-219ENST00000495039 NECTIN1Q15223 517 aa3.21□□□□□ -1.9
VPS50-219ENST00000495039 TOMM20Q15388 145 aa3.21□□□□□ -1.9
VPS50-219ENST00000495039 BMP2KLQ5H9B9 411 aa3.21□□□□□ -1.9
VPS50-219ENST00000495039 KLC3Q6P597 504 aa3.21□□□□□ -1.9
VPS50-219ENST00000495039 GUF1Q8N442 669 aaKnown RBP3.21□□□□□ -1.9
VPS50-219ENST00000495039 ZNF383Q8NA42 475 aa3.21□□□□□ -1.9
VPS50-219ENST00000495039 AVL9Q8NBF6 648 aa3.21□□□□□ -1.9
VPS50-219ENST00000495039 OR2T11Q8NH01 316 aa3.21□□□□□ -1.9
VPS50-219ENST00000495039 PTPMT1Q8WUK0 201 aaPredicted RBP3.21□□□□□ -1.9
VPS50-219ENST00000495039 SUSD6Q92537 303 aa3.21□□□□□ -1.9
VPS50-219ENST00000495039 TMCO6Q96DC7 493 aa3.21□□□□□ -1.9
VPS50-219ENST00000495039 ERLEC1Q96DZ1 483 aa3.21□□□□□ -1.9
VPS50-219ENST00000495039 CYYR1Q96J86 154 aa3.21□□□□□ -1.9
VPS50-219ENST00000495039 NEK1Q96PY6 1258 aa3.21□□□□□ -1.9
VPS50-219ENST00000495039 GCNAQ96QF7 691 aa3.21□□□□□ -1.9
VPS50-219ENST00000495039 MRPL1Q9BYD6 325 aaKnown RBP3.21□□□□□ -1.9
VPS50-219ENST00000495039 HHATLQ9HCP6 504 aa3.21□□□□□ -1.9
VPS50-219ENST00000495039 MIOSQ9NXC5 875 aa3.21□□□□□ -1.9
VPS50-219ENST00000495039 TERF2IPQ9NYB0 399 aa3.21□□□□□ -1.9
VPS50-219ENST00000495039 GPR83Q9NYM4 423 aa3.21□□□□□ -1.9
VPS50-219ENST00000495039 ERAP1Q9NZ08 941 aa3.21□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms