RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 INPP5DQ92835 1189 aa14.3□□□□□ -0.12
USP4-212ENST00000486549 OR6C1Q96RD1 312 aa14.3□□□□□ -0.12
USP4-212ENST00000486549 UBL7Q96S82 380 aaPredicted RBP14.3□□□□□ -0.12
USP4-212ENST00000486549 KLHL25Q9H0H3 589 aa14.3□□□□□ -0.12
USP4-212ENST00000486549 SOHLH2Q9NX45 425 aa14.3□□□□□ -0.12
USP4-212ENST00000486549 SPHK1Q9NYA1 384 aa14.3□□□□□ -0.12
USP4-212ENST00000486549 ACTR10Q9NZ32 417 aa14.3□□□□□ -0.12
USP4-212ENST00000486549 DMGDHQ9UI17 866 aaKnown RBP14.3□□□□□ -0.12
USP4-212ENST00000486549 TRMT6Q9UJA5 497 aaKnown RBP14.3□□□□□ -0.12
USP4-212ENST00000486549 RALYQ9UKM9 306 aaKnown RBP14.3□□□□□ -0.12
USP4-212ENST00000486549 SLC39A10Q9ULF5 831 aa14.3□□□□□ -0.12
USP4-212ENST00000486549 DHRS7Q9Y394 339 aa14.3□□□□□ -0.12
USP4-212ENST00000486549 SDK2Q58EX2 2172 aa14.3□□□□□ -0.12
USP4-212ENST00000486549 SNRNP200O75643 2136 aaKnown RBP14.29□□□□□ -0.12
USP4-212ENST00000486549 TEX51A0A1B0GUA7 166 aa14.29□□□□□ -0.12
USP4-212ENST00000486549 SLC9B1P1A6NJY1 282 aa14.29□□□□□ -0.12
USP4-212ENST00000486549 ISM1B1AKI9 464 aa14.29□□□□□ -0.12
USP4-212ENST00000486549 POLR1CO15160 346 aaPredicted RBP14.29□□□□□ -0.12
USP4-212ENST00000486549 KLK10O43240 276 aa14.29□□□□□ -0.12
USP4-212ENST00000486549 EBLN1P0CF75 366 aa14.29□□□□□ -0.12
USP4-212ENST00000486549 PVRP15151 417 aa14.29□□□□□ -0.12
USP4-212ENST00000486549 MCM3P25205 808 aa14.29□□□□□ -0.12
USP4-212ENST00000486549 ITPKBP27987 946 aa14.29□□□□□ -0.12
USP4-212ENST00000486549 PRDX3P30048 256 aaKnown RBP14.29□□□□□ -0.12
USP4-212ENST00000486549 RAB28P51157 221 aa14.29□□□□□ -0.12
USP4-212ENST00000486549 CDKN2DP55273 166 aa14.29□□□□□ -0.12
USP4-212ENST00000486549 TLE3Q04726 772 aa14.29□□□□□ -0.12
USP4-212ENST00000486549 CBLBQ13191 982 aa14.29□□□□□ -0.12
USP4-212ENST00000486549 GRB7Q14451 532 aa14.29□□□□□ -0.12
USP4-212ENST00000486549 CEACAM20Q6UY09 585 aa14.29□□□□□ -0.12
USP4-212ENST00000486549 GPR155Q7Z3F1 870 aa14.29□□□□□ -0.12
USP4-212ENST00000486549 STRA8Q7Z7C7 330 aa14.29□□□□□ -0.12
USP4-212ENST00000486549 GALNT7Q86SF2 657 aa14.29□□□□□ -0.12
USP4-212ENST00000486549 TRIM73Q86UV7 250 aa14.29□□□□□ -0.12
USP4-212ENST00000486549 SPACA3Q8IXA5 215 aa14.29□□□□□ -0.12
USP4-212ENST00000486549 RAD51AP1Q96B01 352 aa14.29□□□□□ -0.12
USP4-212ENST00000486549 DDA1Q9BW61 102 aa14.29□□□□□ -0.12
USP4-212ENST00000486549 ASPSCR1Q9BZE9 553 aa14.29□□□□□ -0.12
USP4-212ENST00000486549 FBXO8Q9NRD0 319 aa14.29□□□□□ -0.12
USP4-212ENST00000486549 FAM114A2Q9NRY5 505 aa14.29□□□□□ -0.12
USP4-212ENST00000486549 TAS2R13Q9NYV9 303 aa14.29□□□□□ -0.12
USP4-212ENST00000486549 MOCS1Q9NZB8 636 aa14.29□□□□□ -0.12
USP4-212ENST00000486549 PCDHB11Q9Y5F2 797 aa14.29□□□□□ -0.12
USP4-212ENST00000486549 PCDHGA3Q9Y5H0 932 aa14.29□□□□□ -0.12
USP4-212ENST00000486549 PSAT1Q9Y617 370 aa14.29□□□□□ -0.12
USP4-212ENST00000486549 ARHGEF33A8MVX0 844 aa14.28□□□□□ -0.12
USP4-212ENST00000486549 TK2O00142 265 aa14.28□□□□□ -0.12
USP4-212ENST00000486549 RASGRF2O14827 1237 aa14.28□□□□□ -0.12
USP4-212ENST00000486549 MATN4O95460 622 aa14.28□□□□□ -0.12
USP4-212ENST00000486549 ZBTB11O95625 1053 aaPredicted RBP14.28□□□□□ -0.12
USP4-212ENST00000486549 FOLR1P15328 257 aa14.28□□□□□ -0.12
USP4-212ENST00000486549 UGT2B7P16662 529 aa14.28□□□□□ -0.12
USP4-212ENST00000486549 SAT1P21673 171 aa14.28□□□□□ -0.12
USP4-212ENST00000486549 PEBP1P30086 187 aaKnown RBP14.28□□□□□ -0.12
USP4-212ENST00000486549 CCNFP41002 786 aa14.28□□□□□ -0.12
USP4-212ENST00000486549 MAGEA4P43358 317 aa14.28□□□□□ -0.12
USP4-212ENST00000486549 PGGT1BP53609 377 aa14.28□□□□□ -0.12
USP4-212ENST00000486549 HSD11B2P80365 405 aa14.28□□□□□ -0.12
USP4-212ENST00000486549 TUBB3Q13509 450 aa14.28□□□□□ -0.12
USP4-212ENST00000486549 TGIF1Q15583 401 aa14.28□□□□□ -0.12
USP4-212ENST00000486549 HECTD2Q5U5R9 776 aa14.28□□□□□ -0.12
USP4-212ENST00000486549 UGT3A1Q6NUS8 523 aa14.28□□□□□ -0.12
USP4-212ENST00000486549 SPESP1Q6UW49 350 aa14.28□□□□□ -0.12
USP4-212ENST00000486549 PIWIL4Q7Z3Z4 852 aaKnown RBP14.28□□□□□ -0.12
USP4-212ENST00000486549 KMT5CQ86Y97 462 aa14.28□□□□□ -0.12
USP4-212ENST00000486549 LINC01555Q8NAE3 123 aa14.28□□□□□ -0.12
USP4-212ENST00000486549 IFT81Q8WYA0 676 aa14.28□□□□□ -0.12
USP4-212ENST00000486549 AHCTF1Q8WYP5 2266 aa14.28□□□□□ -0.12
USP4-212ENST00000486549 SEC14L1Q92503 715 aa14.28□□□□□ -0.12
USP4-212ENST00000486549 SLC41A2Q96JW4 573 aa14.28□□□□□ -0.12
USP4-212ENST00000486549 TEFMQ96QE5 360 aaKnown RBP14.28□□□□□ -0.12
USP4-212ENST00000486549 MENTQ9BUN1 341 aa14.28□□□□□ -0.12
USP4-212ENST00000486549 PHACTR1Q9C0D0 580 aa14.28□□□□□ -0.12
USP4-212ENST00000486549 PRORYQ9H606 182 aa14.28□□□□□ -0.12
USP4-212ENST00000486549 SMYD2Q9NRG4 433 aa14.28□□□□□ -0.12
USP4-212ENST00000486549 C1GALT1Q9NS00 363 aa14.28□□□□□ -0.12
USP4-212ENST00000486549 ZDHHC18Q9NUE0 388 aa14.28□□□□□ -0.12
USP4-212ENST00000486549 OR6C2Q9NZP2 312 aa14.28□□□□□ -0.12
USP4-212ENST00000486549 SEMA5BQ9P283 1151 aa14.28□□□□□ -0.12
USP4-212ENST00000486549 KLHL42Q9P2K6 505 aa14.28□□□□□ -0.12
USP4-212ENST00000486549 CACNA1GO43497 2377 aa14.27□□□□□ -0.12
USP4-212ENST00000486549 TCRBV9S1A1TA0A576 114 aa14.27□□□□□ -0.13
USP4-212ENST00000486549 PSIP1O75475 530 aaKnown RBP14.27□□□□□ -0.13
USP4-212ENST00000486549 CATP04040 527 aaKnown RBP14.27□□□□□ -0.13
USP4-212ENST00000486549 MPC1LP0DKB6 136 aa14.27□□□□□ -0.13
USP4-212ENST00000486549 LIPCP11150 499 aa14.27□□□□□ -0.13
USP4-212ENST00000486549 ENO3P13929 434 aaPredicted RBP14.27□□□□□ -0.13
USP4-212ENST00000486549 ST6GAL1P15907 406 aa14.27□□□□□ -0.13
USP4-212ENST00000486549 CD9P21926 228 aa14.27□□□□□ -0.13
USP4-212ENST00000486549 CD82P27701 267 aa14.27□□□□□ -0.13
USP4-212ENST00000486549 GPX6P59796 221 aa14.27□□□□□ -0.13
USP4-212ENST00000486549 TIAL1Q01085 375 aaKnown RBP eCLIP14.27□□□□□ -0.13
USP4-212ENST00000486549 CLN3Q13286 438 aa14.27□□□□□ -0.13
USP4-212ENST00000486549 PDAP1Q13442 181 aaKnown RBP14.27□□□□□ -0.13
USP4-212ENST00000486549 GPR19Q15760 415 aa14.27□□□□□ -0.13
USP4-212ENST00000486549 GLE1Q53GS7 698 aaKnown RBP14.27□□□□□ -0.13
USP4-212ENST00000486549 EEF1AKMT2Q5JPI9 291 aaKnown RBP14.27□□□□□ -0.13
USP4-212ENST00000486549 TMTC4Q5T4D3 741 aa14.27□□□□□ -0.13
USP4-212ENST00000486549 FAM45BPQ6NSW5 357 aa14.27□□□□□ -0.13
USP4-212ENST00000486549 PAQR3Q6TCH7 311 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms