RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 NAGLUP54802 743 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 SELENOVP59797 346 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 SREBF2Q12772 1141 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 MAPK7Q13164 816 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 PKP1Q13835 747 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 NFYCQ13952 458 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 FLOT2Q14254 428 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 ANGPT1Q15389 498 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 ZNF484Q5JVG2 852 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 ATF7IP2Q5U623 682 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 SCARA5Q6ZMJ2 495 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 CHST3Q7LGC8 479 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 SCN4BQ8IWT1 228 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 DSELQ8IZU8 1212 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 PDIK1LQ8N165 341 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 ZNF786Q8N393 782 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 FNDC5Q8NAU1 212 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 CPEB3Q8NE35 698 aaKnown RBP4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 RDM1Q8NG50 284 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 GPR150Q8NGU9 434 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 RFT1Q96AA3 541 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 OTUB2Q96DC9 234 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 DPYSL5Q9BPU6 564 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 PYM1Q9BRP8 204 aaKnown RBP4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 UBAC1Q9BSL1 405 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 EXO5Q9H790 373 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 MRPL44Q9H9J2 332 aaKnown RBP4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 MLXIPQ9HAP2 919 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 NMUR1Q9HB89 426 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 FOLH1BQ9HBA9 442 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 ASCL3Q9NQ33 180 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 TMEM140Q9NV12 185 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 IMPACTQ9P2X3 320 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 SRRDQ9UH36 339 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 TRMT6Q9UJA5 497 aaKnown RBP4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 SLC9A8Q9Y2E8 581 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 GDAQ9Y2T3 454 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 WBP11Q9Y2W2 641 aaKnown RBP4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 MFHAS1Q9Y4C4 1052 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 OTOFQ9HC10 1997 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 TRAV34A0A0B4J273 112 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 FAM172BPA6NC97 362 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 CFAP73A6NFT4 308 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 URADA6NGE7 173 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 E9PI62 339 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 UGDHO60701 494 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 EIF1BO60739 113 aaKnown RBP4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 OPHN1O60890 802 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 CIB2O75838 187 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 SYF2O95926 243 aaKnown RBP4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 F9P00740 461 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 ESR1P03372 595 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 UQCRFS1P1P0C7P4 283 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 PLA2G4BP0C869 781 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 CBR1P16152 277 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 TACR3P29371 465 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 EIF1P41567 113 aaKnown RBP4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 ACTR1BP42025 376 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 SLC1A6P48664 564 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 FLT3LGP49771 235 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 TAS2R60P59551 318 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 ATP6V0D1P61421 351 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 MGAT5Q09328 741 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 MGAT2Q10469 447 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 TROAPQ12815 778 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 NPRL3Q12980 569 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 PRKAA1Q13131 559 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 GPR176Q14439 515 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 TYSND1Q2T9J0 566 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 C2CD6Q53TS8 623 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 FBXO47Q5MNV8 452 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 UBXN11Q5T124 520 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 TMEM63BQ5T3F8 832 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 FAM160B1Q5W0V3 765 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 ZDHHC20Q5W0Z9 365 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 RNF207Q6ZRF8 634 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 MOB2Q70IA6 237 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 DPPA2Q7Z7J5 298 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 METTL23Q86XA0 190 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 RTL3Q8N8U3 475 aaKnown RBP4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 BPIFCQ8NFQ6 507 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 WDR48Q8TAF3 677 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 ZNF596Q8TC21 504 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 STT3BQ8TCJ2 826 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 CD300LFQ8TDQ1 290 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 PYDC1Q8WXC3 89 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 PSPC1Q8WXF1 523 aaKnown RBP4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 PIGKQ92643 395 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 MRPL38Q96DV4 380 aaKnown RBP4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 SIPA1Q96FS4 1042 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 SERAC1Q96JX3 654 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 FAM84BQ96KN1 310 aaPredicted RBP4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 MRGPRX1Q96LB2 322 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 PTPN18Q99952 460 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 SH2D3AQ9BRG2 576 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 MTG1Q9BT17 334 aaPredicted RBP4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 PAPOLGQ9BWT3 736 aaKnown RBP4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 ITPAQ9BY32 194 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 DERL2Q9GZP9 239 aa4.7□□□□□ -1.66
CCDC88A-209ENST00000456975 ST6GALNAC4Q9H4F1 302 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms