RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 HGH1Q9BTY7 390 aa13.84□□□□□ -0.19
HMGN1-208ENST00000443046 NAT10Q9H0A0 1025 aaKnown RBP13.84□□□□□ -0.19
HMGN1-208ENST00000443046 MRM3Q9HC36 420 aaKnown RBP13.84□□□□□ -0.19
HMGN1-208ENST00000443046 CHST11Q9NPF2 352 aa13.84□□□□□ -0.19
HMGN1-208ENST00000443046 CDC23Q9UJX2 597 aa13.84□□□□□ -0.19
HMGN1-208ENST00000443046 PLCL2Q9UPR0 1127 aa13.84□□□□□ -0.19
HMGN1-208ENST00000443046 SMTNL1A8MU46 457 aa13.83□□□□□ -0.2
HMGN1-208ENST00000443046 KLHL18O94889 574 aa13.83□□□□□ -0.2
HMGN1-208ENST00000443046 ACADLP28330 430 aa13.83□□□□□ -0.2
HMGN1-208ENST00000443046 HTR1EP28566 365 aa13.83□□□□□ -0.2
HMGN1-208ENST00000443046 SHMT2P34897 504 aa13.83□□□□□ -0.2
HMGN1-208ENST00000443046 ADRA1AP35348 466 aa13.83□□□□□ -0.2
HMGN1-208ENST00000443046 ARHGAP25P42331 645 aa13.83□□□□□ -0.2
HMGN1-208ENST00000443046 CDKN2BP42772 138 aa13.83□□□□□ -0.2
HMGN1-208ENST00000443046 KCNK10P57789 538 aa13.83□□□□□ -0.2
HMGN1-208ENST00000443046 SNX20Q7Z614 316 aa13.83□□□□□ -0.2
HMGN1-208ENST00000443046 HOOK3Q86VS8 718 aa13.83□□□□□ -0.2
HMGN1-208ENST00000443046 ZNF808Q8N4W9 903 aaPredicted RBP13.83□□□□□ -0.2
HMGN1-208ENST00000443046 OR11G2Q8NGC1 345 aa13.83□□□□□ -0.2
HMGN1-208ENST00000443046 OR5AR1Q8NGP9 310 aa13.83□□□□□ -0.2
HMGN1-208ENST00000443046 OR13C4Q8NGS5 318 aa13.83□□□□□ -0.2
HMGN1-208ENST00000443046 CTNNBL1Q8WYA6 563 aaPredicted RBP13.83□□□□□ -0.2
HMGN1-208ENST00000443046 NR4A3Q92570 626 aa13.83□□□□□ -0.2
HMGN1-208ENST00000443046 CCDC120Q96HB5 630 aa13.83□□□□□ -0.2
HMGN1-208ENST00000443046 THOC3Q96J01 351 aaKnown RBP13.83□□□□□ -0.2
HMGN1-208ENST00000443046 EURLQ9NYK6 297 aa13.83□□□□□ -0.2
HMGN1-208ENST00000443046 OR6C2Q9NZP2 312 aa13.83□□□□□ -0.2
HMGN1-208ENST00000443046 KLHL8Q9P2G9 620 aaPredicted RBP13.83□□□□□ -0.2
HMGN1-208ENST00000443046 CRLS1Q9UJA2 301 aa13.83□□□□□ -0.2
HMGN1-208ENST00000443046 ZNF469Q96JG9 3925 aaPredicted RBP13.83□□□□□ -0.2
HMGN1-208ENST00000443046 NCOA6Q14686 2063 aaPredicted RBP13.83□□□□□ -0.2
HMGN1-208ENST00000443046 TRBV5-4A0A0C4DH59 114 aa13.82□□□□□ -0.2
HMGN1-208ENST00000443046 A0A1B0GX78 115 aa13.82□□□□□ -0.2
HMGN1-208ENST00000443046 VSTM2BA6NLU5 285 aa13.82□□□□□ -0.2
HMGN1-208ENST00000443046 CFAP99D6REC4 459 aa13.82□□□□□ -0.2
HMGN1-208ENST00000443046 KRT1P04264 644 aa13.82□□□□□ -0.2
HMGN1-208ENST00000443046 GSTM1P09488 218 aa13.82□□□□□ -0.2
HMGN1-208ENST00000443046 TMEM253P0C7T8 217 aa13.82□□□□□ -0.2
HMGN1-208ENST00000443046 ATXN8OSP0DMR3 200 aa13.82□□□□□ -0.2
HMGN1-208ENST00000443046 PEBP1P30086 187 aaKnown RBP13.82□□□□□ -0.2
HMGN1-208ENST00000443046 ZNF140P52738 457 aaPredicted RBP13.82□□□□□ -0.2
HMGN1-208ENST00000443046 GSTM4Q03013 218 aa13.82□□□□□ -0.2
HMGN1-208ENST00000443046 SLC18A3Q16572 532 aa13.82□□□□□ -0.2
HMGN1-208ENST00000443046 ASTE1Q2TB18 679 aaPredicted RBP13.82□□□□□ -0.2
HMGN1-208ENST00000443046 TUBB8Q3ZCM7 444 aa13.82□□□□□ -0.2
HMGN1-208ENST00000443046 IRAK1BP1Q5VVH5 260 aa13.82□□□□□ -0.2
HMGN1-208ENST00000443046 SPNS3Q6ZMD2 512 aa13.82□□□□□ -0.2
HMGN1-208ENST00000443046 TTLL10Q6ZVT0 673 aa13.82□□□□□ -0.2
HMGN1-208ENST00000443046 MRGPRGQ86SM5 289 aa13.82□□□□□ -0.2
HMGN1-208ENST00000443046 SLC35G2Q8TBE7 412 aa13.82□□□□□ -0.2
HMGN1-208ENST00000443046 DLG3Q92796 817 aa13.82□□□□□ -0.2
HMGN1-208ENST00000443046 FSD1LQ9BXM9 530 aa13.82□□□□□ -0.2
HMGN1-208ENST00000443046 FAM96AQ9H5X1 160 aa13.82□□□□□ -0.2
HMGN1-208ENST00000443046 TRHDEQ9UKU6 1024 aa13.82□□□□□ -0.2
HMGN1-208ENST00000443046 CST8O60676 142 aa13.81□□□□□ -0.2
HMGN1-208ENST00000443046 PIM1P11309 404 aaPredicted RBP13.81□□□□□ -0.2
HMGN1-208ENST00000443046 ALAS2P22557 587 aa13.81□□□□□ -0.2
HMGN1-208ENST00000443046 ACRV1P26436 265 aa13.81□□□□□ -0.2
HMGN1-208ENST00000443046 SOX11P35716 441 aa13.81□□□□□ -0.2
HMGN1-208ENST00000443046 CDKN1CP49918 316 aaPredicted RBP13.81□□□□□ -0.2
HMGN1-208ENST00000443046 TNFSF10P50591 281 aa13.81□□□□□ -0.2
HMGN1-208ENST00000443046 ARSFP54793 590 aa13.81□□□□□ -0.2
HMGN1-208ENST00000443046 TFDP2Q14188 446 aa13.81□□□□□ -0.2
HMGN1-208ENST00000443046 KIR2DS3Q14952 304 aa13.81□□□□□ -0.2
HMGN1-208ENST00000443046 INAQ16352 499 aa13.81□□□□□ -0.2
HMGN1-208ENST00000443046 GPR33Q49SQ1 333 aa13.81□□□□□ -0.2
HMGN1-208ENST00000443046 LINC00696Q6ZRV3 163 aa13.81□□□□□ -0.2
HMGN1-208ENST00000443046 TBC1D21Q8IYX1 336 aa13.81□□□□□ -0.2
HMGN1-208ENST00000443046 OR1N1Q8NGS0 311 aa13.81□□□□□ -0.2
HMGN1-208ENST00000443046 DENND1AQ8TEH3 1009 aa13.81□□□□□ -0.2
HMGN1-208ENST00000443046 CPLX3Q8WVH0 158 aa13.81□□□□□ -0.2
HMGN1-208ENST00000443046 ZNF285Q96NJ3 590 aa13.81□□□□□ -0.2
HMGN1-208ENST00000443046 QKIQ96PU8 341 aaKnown RBP eCLIP13.81□□□□□ -0.23e-41■■■■■ 75.6
HMGN1-208ENST00000443046 MESP1Q9BRJ9 268 aa13.81□□□□□ -0.2
HMGN1-208ENST00000443046 FICDQ9BVA6 458 aa13.81□□□□□ -0.2
HMGN1-208ENST00000443046 VPS37BQ9H9H4 285 aa13.81□□□□□ -0.2
HMGN1-208ENST00000443046 SEMA3GQ9NS98 782 aa13.81□□□□□ -0.2
HMGN1-208ENST00000443046 DDX56Q9NY93 547 aaKnown RBP13.81□□□□□ -0.2
HMGN1-208ENST00000443046 ZDHHC3Q9NYG2 299 aa13.81□□□□□ -0.2
HMGN1-208ENST00000443046 POLG2Q9UHN1 485 aa13.81□□□□□ -0.2
HMGN1-208ENST00000443046 NXT1Q9UKK6 140 aaKnown RBP13.81□□□□□ -0.2
HMGN1-208ENST00000443046 LUC7L2Q9Y383 392 aaKnown RBP13.81□□□□□ -0.2
HMGN1-208ENST00000443046 DSCR3O14972 297 aa13.8□□□□□ -0.2
HMGN1-208ENST00000443046 HPP00738 406 aa13.8□□□□□ -0.2
HMGN1-208ENST00000443046 SERPINC1P01008 464 aa13.8□□□□□ -0.2
HMGN1-208ENST00000443046 GYPCP04921 128 aa13.8□□□□□ -0.2
HMGN1-208ENST00000443046 COX6B1P14854 86 aa13.8□□□□□ -0.2
HMGN1-208ENST00000443046 ITGALP20701 1170 aa13.8□□□□□ -0.2
HMGN1-208ENST00000443046 CA7P43166 264 aa13.8□□□□□ -0.2
HMGN1-208ENST00000443046 OLIG2Q13516 323 aa13.8□□□□□ -0.2
HMGN1-208ENST00000443046 IQCB1Q15051 598 aa13.8□□□□□ -0.2
HMGN1-208ENST00000443046 ZNF449Q6P9G9 518 aa13.8□□□□□ -0.2
HMGN1-208ENST00000443046 RPTNQ6XPR3 784 aa13.8□□□□□ -0.2
HMGN1-208ENST00000443046 MCATQ8IVS2 390 aaKnown RBP13.8□□□□□ -0.2
HMGN1-208ENST00000443046 CLDN19Q8N6F1 224 aa13.8□□□□□ -0.2
HMGN1-208ENST00000443046 OR5K2Q8NHB8 316 aa13.8□□□□□ -0.2
HMGN1-208ENST00000443046 ZDHHC19Q8WVZ1 309 aaPredicted RBP13.8□□□□□ -0.2
HMGN1-208ENST00000443046 PSMF1Q92530 271 aa13.8□□□□□ -0.2
HMGN1-208ENST00000443046 HAS2Q92819 552 aa13.8□□□□□ -0.2
HMGN1-208ENST00000443046 IQCDQ96DY2 449 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms