RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 TMEM164Q5U3C3 297 aa11.87□□□□□ -0.51
PTPRF-208ENST00000437607 HECTD2Q5U5R9 776 aa11.87□□□□□ -0.51
PTPRF-208ENST00000437607 RAPH1Q70E73 1250 aa11.87□□□□□ -0.51
PTPRF-208ENST00000437607 MTERF4Q7Z6M4 381 aaKnown RBP11.87□□□□□ -0.51
PTPRF-208ENST00000437607 TRABD2AQ86V40 505 aa11.87□□□□□ -0.51
PTPRF-208ENST00000437607 CYP4X1Q8N118 509 aa11.87□□□□□ -0.51
PTPRF-208ENST00000437607 TLCD1Q96CP7 247 aa11.87□□□□□ -0.51
PTPRF-208ENST00000437607 SCARF2Q96GP6 870 aaPredicted RBP11.87□□□□□ -0.51
PTPRF-208ENST00000437607 CABS1Q96KC9 395 aa11.87□□□□□ -0.51
PTPRF-208ENST00000437607 TSNARE1Q96NA8 513 aa11.87□□□□□ -0.51
PTPRF-208ENST00000437607 MCMBPQ9BTE3 642 aa11.87□□□□□ -0.51
PTPRF-208ENST00000437607 PHPT1Q9NRX4 125 aaPredicted RBP11.87□□□□□ -0.51
PTPRF-208ENST00000437607 OCIAD1Q9NX40 245 aa11.87□□□□□ -0.51
PTPRF-208ENST00000437607 SLC17A4Q9Y2C5 497 aa11.87□□□□□ -0.51
PTPRF-208ENST00000437607 MTO1Q9Y2Z2 717 aaKnown RBP11.87□□□□□ -0.51
PTPRF-208ENST00000437607 B3GALT1Q9Y5Z6 326 aa11.87□□□□□ -0.51
PTPRF-208ENST00000437607 ACTL7BQ9Y614 415 aa11.87□□□□□ -0.51
PTPRF-208ENST00000437607 IGLV3-16A0A075B6K0 115 aa11.86□□□□□ -0.51
PTPRF-208ENST00000437607 H3BQF6 201 aa11.86□□□□□ -0.51
PTPRF-208ENST00000437607 MTX2O75431 263 aa11.86□□□□□ -0.51
PTPRF-208ENST00000437607 AP2A2O94973 939 aa11.86□□□□□ -0.51
PTPRF-208ENST00000437607 SYF2O95926 243 aaKnown RBP11.86□□□□□ -0.51
PTPRF-208ENST00000437607 ALDOAP04075 364 aaKnown RBP11.86□□□□□ -0.51
PTPRF-208ENST00000437607 OR56A5P0C7T3 313 aa11.86□□□□□ -0.51
PTPRF-208ENST00000437607 TYK2P29597 1187 aa11.86□□□□□ -0.51
PTPRF-208ENST00000437607 HPDP32754 393 aaPredicted RBP11.86□□□□□ -0.51
PTPRF-208ENST00000437607 CCNFP41002 786 aa11.86□□□□□ -0.51
PTPRF-208ENST00000437607 RAB10P61026 200 aa11.86□□□□□ -0.51
PTPRF-208ENST00000437607 TLE1Q04724 770 aa11.86□□□□□ -0.51
PTPRF-208ENST00000437607 PDAP1Q13442 181 aaKnown RBP11.86□□□□□ -0.51
PTPRF-208ENST00000437607 TRA2AQ13595 282 aaKnown RBP eCLIP11.86□□□□□ -0.51
PTPRF-208ENST00000437607 CTSL3PQ5NE16 218 aa11.86□□□□□ -0.51
PTPRF-208ENST00000437607 DOK6Q6PKX4 331 aa11.86□□□□□ -0.51
PTPRF-208ENST00000437607 TIFABQ6ZNK6 161 aa11.86□□□□□ -0.51
PTPRF-208ENST00000437607 CMC1Q7Z7K0 106 aa11.86□□□□□ -0.51
PTPRF-208ENST00000437607 TRIM74Q86UV6 250 aa11.86□□□□□ -0.51
PTPRF-208ENST00000437607 C4orf33Q8N1A6 199 aa11.86□□□□□ -0.51
PTPRF-208ENST00000437607 BMPERQ8N8U9 685 aa11.86□□□□□ -0.51
PTPRF-208ENST00000437607 OR4D9Q8NGE8 314 aa11.86□□□□□ -0.51
PTPRF-208ENST00000437607 ACMSDQ8TDX5 336 aa11.86□□□□□ -0.51
PTPRF-208ENST00000437607 MZB1Q8WU39 189 aa11.86□□□□□ -0.51
PTPRF-208ENST00000437607 KCNJ9Q92806 393 aa11.86□□□□□ -0.51
PTPRF-208ENST00000437607 ISL2Q96A47 359 aa11.86□□□□□ -0.51
PTPRF-208ENST00000437607 ALKBH8Q96BT7 664 aaKnown RBP11.86□□□□□ -0.51
PTPRF-208ENST00000437607 APOPT1Q96IL0 206 aa11.86□□□□□ -0.51
PTPRF-208ENST00000437607 PANX3Q96QZ0 392 aa11.86□□□□□ -0.51
PTPRF-208ENST00000437607 SELENOSQ9BQE4 189 aa11.86□□□□□ -0.51
PTPRF-208ENST00000437607 IQCGQ9H095 443 aaKnown RBP11.86□□□□□ -0.51
PTPRF-208ENST00000437607 CAB39LQ9H9S4 337 aa11.86□□□□□ -0.51
PTPRF-208ENST00000437607 TAS2R13Q9NYV9 303 aa11.86□□□□□ -0.51
PTPRF-208ENST00000437607 TRMT6Q9UJA5 497 aaKnown RBP11.86□□□□□ -0.51
PTPRF-208ENST00000437607 PCYT1BQ9Y5K3 369 aaPredicted RBP11.86□□□□□ -0.51
PTPRF-208ENST00000437607 GOLGA8RI6L899 631 aa11.85□□□□□ -0.51
PTPRF-208ENST00000437607 PHGDHO43175 533 aaKnown RBP11.85□□□□□ -0.51
PTPRF-208ENST00000437607 ASMTLO95671 621 aa11.85□□□□□ -0.51
PTPRF-208ENST00000437607 EML2O95834 649 aa11.85□□□□□ -0.51
PTPRF-208ENST00000437607 FTH1P02794 183 aa11.85□□□□□ -0.51
PTPRF-208ENST00000437607 ATP1B2P14415 290 aaPredicted RBP11.85□□□□□ -0.51
PTPRF-208ENST00000437607 KRT4P19013 534 aa11.85□□□□□ -0.51
PTPRF-208ENST00000437607 FDXRP22570 491 aa11.85□□□□□ -0.51
PTPRF-208ENST00000437607 CRABP2P29373 138 aa11.85□□□□□ -0.51
PTPRF-208ENST00000437607 OAS2P29728 719 aaKnown RBP11.85□□□□□ -0.51
PTPRF-208ENST00000437607 CA5AP35218 305 aa11.85□□□□□ -0.51
PTPRF-208ENST00000437607 KPNA2P52292 529 aaKnown RBP11.85□□□□□ -0.51
PTPRF-208ENST00000437607 ZKSCAN8Q15776 578 aaPredicted RBP11.85□□□□□ -0.51
PTPRF-208ENST00000437607 UGT3A1Q6NUS8 523 aa11.85□□□□□ -0.51
PTPRF-208ENST00000437607 BORAQ6PGQ7 559 aa11.85□□□□□ -0.51
PTPRF-208ENST00000437607 DET1Q7L5Y6 550 aa11.85□□□□□ -0.51
PTPRF-208ENST00000437607 CCDC91Q7Z6B0 441 aa11.85□□□□□ -0.51
PTPRF-208ENST00000437607 ZNF761Q86XN6 746 aaPredicted RBP11.85□□□□□ -0.51
PTPRF-208ENST00000437607 PTRH1Q86Y79 214 aaKnown RBP11.85□□□□□ -0.51
PTPRF-208ENST00000437607 TRAPPC5Q8IUR0 188 aa11.85□□□□□ -0.51
PTPRF-208ENST00000437607 OLFM1Q99784 485 aa11.85□□□□□ -0.51
PTPRF-208ENST00000437607 DDA1Q9BW61 102 aa11.85□□□□□ -0.51
PTPRF-208ENST00000437607 SPRY4Q9C004 299 aa11.85□□□□□ -0.51
PTPRF-208ENST00000437607 P2RY12Q9H244 342 aa11.85□□□□□ -0.51
PTPRF-208ENST00000437607 VPS11Q9H270 941 aa11.85□□□□□ -0.51
PTPRF-208ENST00000437607 ADNPQ9H2P0 1102 aa11.85□□□□□ -0.51
PTPRF-208ENST00000437607 POPDC3Q9HBV1 291 aa11.85□□□□□ -0.51
PTPRF-208ENST00000437607 SARS2Q9NP81 518 aaKnown RBP11.85□□□□□ -0.51
PTPRF-208ENST00000437607 AKAP7Q9P0M2 348 aaPredicted RBP11.85□□□□□ -0.51
PTPRF-208ENST00000437607 TLK1Q9UKI8 766 aa11.85□□□□□ -0.51
PTPRF-208ENST00000437607 TMEM98Q9Y2Y6 226 aa11.85□□□□□ -0.51
PTPRF-208ENST00000437607 A0A087X1B8 175 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 A0A096LPK6 155 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 HMX2A2RU54 273 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 B4E171 279 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 COPEO14579 308 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 VEGFDO43915 354 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 GLRA3O75311 464 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 NIPSNAP2O75323 286 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 PYGBP11216 843 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 BRAFP15056 766 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 CHRM3P20309 590 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 NR1D1P20393 614 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 TSPAN7P41732 249 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 ACTR1BP42025 376 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 MAGEA12P43365 314 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 PRLHRP49683 370 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 ATP1A2P50993 1020 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms