RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 PIM2Q9P1W9 311 aa13.19□□□□□ -0.3
USP49-203ENST00000394253 ZNF282Q9UDV7 671 aaPredicted RBP13.19□□□□□ -0.3
USP49-203ENST00000394253 SNCAIPQ9Y6H5 919 aa13.19□□□□□ -0.3
USP49-203ENST00000394253 C12orf71A8MTZ7 269 aa13.19□□□□□ -0.3
USP49-203ENST00000394253 SLC19A2O60779 497 aa13.19□□□□□ -0.3
USP49-203ENST00000394253 SLC2A5P22732 501 aa13.19□□□□□ -0.3
USP49-203ENST00000394253 ATP5A1P25705 553 aaKnown RBP13.19□□□□□ -0.3
USP49-203ENST00000394253 NDST1P52848 882 aa13.19□□□□□ -0.3
USP49-203ENST00000394253 PFKPQ01813 784 aa13.19□□□□□ -0.3
USP49-203ENST00000394253 MOXD1Q6UVY6 613 aa13.19□□□□□ -0.3
USP49-203ENST00000394253 TMPRSS11BQ86T26 416 aa13.19□□□□□ -0.3
USP49-203ENST00000394253 CREG2Q8IUH2 290 aa13.19□□□□□ -0.3
USP49-203ENST00000394253 LGI2Q8N0V4 545 aa13.19□□□□□ -0.3
USP49-203ENST00000394253 PIAS4Q8N2W9 510 aaPredicted RBP13.19□□□□□ -0.3
USP49-203ENST00000394253 RBM18Q96H35 190 aaKnown RBP13.19□□□□□ -0.3
USP49-203ENST00000394253 OR12D3Q9UGF7 316 aa13.19□□□□□ -0.3
USP49-203ENST00000394253 SPIN1Q9Y657 262 aaPredicted RBP13.19□□□□□ -0.3
USP49-203ENST00000394253 ZNF705GA8MUZ8 300 aaPredicted RBP13.18□□□□□ -0.3
USP49-203ENST00000394253 ZBTB48P10074 688 aaPredicted RBP13.18□□□□□ -0.3
USP49-203ENST00000394253 RRAS2P62070 204 aaPredicted RBP13.18□□□□□ -0.3
USP49-203ENST00000394253 HTD2P86397 168 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 SYT16Q17RD7 645 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 HFE2Q6ZVN8 426 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 PNPLA2Q96AD5 504 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 RIMKLBQ9ULI2 386 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 MINPP1Q9UNW1 487 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 PRR5-ARHGAP8B1AHC4 643 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 CALCAP01258 141 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 TRIM23P36406 574 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 ARHGAP8P85298 464 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 CYCSP99999 105 aaKnown RBP13.18□□□□□ -0.3
USP49-203ENST00000394253 BAATQ14032 418 aaPredicted RBP13.18□□□□□ -0.3
USP49-203ENST00000394253 NCEH1Q6PIU2 408 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 RBM15BQ8NDT2 890 aaKnown RBP13.18□□□□□ -0.3
USP49-203ENST00000394253 OSBPL7Q9BZF2 842 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 CEP152O94986 1710 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 COL6A2P12110 1019 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 CCND3P30281 292 aaPredicted RBP13.18□□□□□ -0.3
USP49-203ENST00000394253 ZNF132P52740 706 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 CDH12P55289 794 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 PTPN20Q4JDL3 420 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 ZDHHC21Q8IVQ6 265 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 ZNF619Q8N2I2 560 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 RIPOR3Q96MK2 946 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 OR2M4Q96R27 311 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 ITPAQ9BY32 194 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 MTG2Q9H4K7 406 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 TDRD3Q9H7E2 651 aaKnown RBP13.18□□□□□ -0.3
USP49-203ENST00000394253 MARCH2Q9P0N8 246 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 FBXL21Q9UKT6 434 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 ACSL5Q9ULC5 683 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 AGR2O95994 175 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 KDELR1P24390 212 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 RPL10P27635 214 aaKnown RBP13.18□□□□□ -0.3
USP49-203ENST00000394253 GPRC5AQ8NFJ5 357 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 OSTF1Q92882 214 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 ADAM7Q9H2U9 754 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 DNAJC18Q9H819 358 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 MIOSQ9NXC5 875 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 PTBP2Q9UKA9 531 aaKnown RBP13.18□□□□□ -0.3
USP49-203ENST00000394253 PI4KAP42356 2102 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 ASXL2Q76L83 1435 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 MAGEB17A8MXT2 336 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 RPL35P42766 123 aaKnown RBP13.18□□□□□ -0.3
USP49-203ENST00000394253 TATDN1Q6P1N9 297 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 PIWIL1Q96J94 861 aaKnown RBP13.18□□□□□ -0.3
USP49-203ENST00000394253 MAPKAP1Q9BPZ7 522 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 ZNF670Q9BS34 389 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 DUSP16Q9BY84 665 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 ZNF726A6NNF4 738 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 OR2B3O76000 313 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 OAZ2O95190 189 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 MIPP30301 263 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 CXCR3P49682 368 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 MPP1Q00013 466 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 NFKB2Q00653 900 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 RBM47A0AV96 593 aaKnown RBP13.18□□□□□ -0.3
USP49-203ENST00000394253 SLC35F4A4IF30 521 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 EFCAB7A8K855 629 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 F8W036 122 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 SNCGO76070 127 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 MATN1P21941 496 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 RPL13AP40429 203 aaKnown RBP13.18□□□□□ -0.3
USP49-203ENST00000394253 RTP1P59025 263 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 BLOC1S1P78537 153 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 SF1Q15637 639 aaKnown RBP13.18□□□□□ -0.3
USP49-203ENST00000394253 MOGQ16653 247 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 KANSL1Q7Z3B3 1105 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 BEST3Q8N1M1 668 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 COX18Q8N8Q8 333 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 DRAXINQ8NBI3 349 aaPredicted RBP13.18□□□□□ -0.3
USP49-203ENST00000394253 ZDHHC9Q9Y397 364 aa13.18□□□□□ -0.3
USP49-203ENST00000394253 TRAV6A0A075B6T7 132 aa13.17□□□□□ -0.3
USP49-203ENST00000394253 SIGLEC16A6NMB1 481 aa13.17□□□□□ -0.3
USP49-203ENST00000394253 MAP2K7O14733 419 aa13.17□□□□□ -0.3
USP49-203ENST00000394253 SNAP29O95721 258 aa13.17□□□□□ -0.3
USP49-203ENST00000394253 VARSP26640 1264 aaKnown RBP13.17□□□□□ -0.3
USP49-203ENST00000394253 YIPF7Q8N8F6 280 aa13.17□□□□□ -0.3
USP49-203ENST00000394253 ZNF606Q8WXB4 792 aa13.17□□□□□ -0.3
USP49-203ENST00000394253 TIFAQ96CG3 184 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms