RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 CYGBQ8WWM9 190 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 HERVK_113Q902F9 699 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 TRIM43Q96BQ3 446 aaPredicted RBP9.44□□□□□ -0.9
COL6A3-204ENST00000392003 ALG14Q96F25 216 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 PPM1MQ96MI6 270 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 SEPHS2Q99611 448 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 TCF25Q9BQ70 676 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 C17orf80Q9BSJ5 609 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 BDH2Q9BUT1 245 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 ZNF334Q9HCZ1 680 aaPredicted RBP9.44□□□□□ -0.9
COL6A3-204ENST00000392003 AGPAT4Q9NRZ5 378 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 KCTD5Q9NXV2 234 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.44□□□□□ -0.9
COL6A3-204ENST00000392003 PCDHGB4Q9UN71 923 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 SLC8A2Q9UPR5 921 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 PCDHGB5Q9Y5G0 923 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 FFAR3O14843 346 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 GPR42O15529 346 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 TLL1O43897 1013 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 TSPAN9O75954 239 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 KCNH1O95259 989 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 EFEMP2O95967 443 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 ABCB1P08183 1280 aaPredicted RBP9.44□□□□□ -0.9
COL6A3-204ENST00000392003 GKP32189 559 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 GNA13Q14344 377 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 TMEM259Q4ZIN3 620 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 GLYATQ6IB77 296 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 USP45Q70EL2 814 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 CARM1Q86X55 608 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 PTRH1Q86Y79 214 aaKnown RBP9.44□□□□□ -0.9
COL6A3-204ENST00000392003 MFSD2AQ8NA29 543 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 EID2BQ96D98 161 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 RNF145Q96MT1 663 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 C19orf43Q9BQ61 176 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 ANKRD60Q9BZ19 345 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 CD244Q9BZW8 370 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 PARVBQ9HBI1 364 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 SLC52A3Q9NQ40 469 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 INTS7Q9NVH2 962 aaKnown RBP9.44□□□□□ -0.9
COL6A3-204ENST00000392003 PTTG2Q9NZH5 202 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 PTBP2Q9UKA9 531 aaKnown RBP9.44□□□□□ -0.9
COL6A3-204ENST00000392003 MAFFQ9ULX9 164 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 RNF11Q9Y3C5 154 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 INSL6Q9Y581 213 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 V9GYQ6 96 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 K7EPI3 171 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 OR7A17O14581 309 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 VILLO15195 856 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 KRT6AP02538 564 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 KRT6BP04259 564 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 ANXA5P08758 320 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 BPIP17213 487 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 NELFEP18615 380 aaKnown RBP9.44□□□□□ -0.9
COL6A3-204ENST00000392003 ITGB8P26012 769 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 STT3AP46977 705 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 KRT6CP48668 564 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 PLIN5Q00G26 463 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 LMAN2Q12907 356 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 UNC5DQ6UXZ4 953 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 Q6ZNB5 142 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 NXPE1Q8N323 547 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 CBARPQ8N350 705 aaPredicted RBP9.44□□□□□ -0.9
COL6A3-204ENST00000392003 ZNF786Q8N393 782 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 AADATQ8N5Z0 425 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 DPP10Q8N608 796 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 DDHD1Q8NEL9 900 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 OR2AP1Q8NGE2 309 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 HM13Q8TCT9 377 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 IL23AQ9NPF7 189 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 ABCB8Q9NUT2 735 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 DNMT3BQ9UBC3 853 aaKnown RBP9.44□□□□□ -0.9
COL6A3-204ENST00000392003 GBF1Q92538 1859 aa9.44□□□□□ -0.9
COL6A3-204ENST00000392003 ASPDHA6ND91 283 aa9.43□□□□□ -0.9
COL6A3-204ENST00000392003 ARNTLO00327 626 aa9.43□□□□□ -0.9
COL6A3-204ENST00000392003 ZW10O43264 779 aa9.43□□□□□ -0.9
COL6A3-204ENST00000392003 SEC22BO75396 215 aa9.43□□□□□ -0.9
COL6A3-204ENST00000392003 CTSAP10619 480 aa9.43□□□□□ -0.9
COL6A3-204ENST00000392003 ZNF23P17027 643 aa9.43□□□□□ -0.9
COL6A3-204ENST00000392003 BTF3P20290 206 aaKnown RBP9.43□□□□□ -0.9
COL6A3-204ENST00000392003 IL12AP29459 219 aa9.43□□□□□ -0.9
COL6A3-204ENST00000392003 IFNA8P32881 189 aa9.43□□□□□ -0.9
COL6A3-204ENST00000392003 NSG1P42857 185 aa9.43□□□□□ -0.9
COL6A3-204ENST00000392003 GNPDA1P46926 289 aa9.43□□□□□ -0.9
COL6A3-204ENST00000392003 PWP1Q13610 501 aa9.43□□□□□ -0.9
COL6A3-204ENST00000392003 APOFQ13790 326 aa9.43□□□□□ -0.9
COL6A3-204ENST00000392003 ABRAXAS2Q15018 415 aa9.43□□□□□ -0.9
COL6A3-204ENST00000392003 PLEKHG6Q3KR16 790 aa9.43□□□□□ -0.9
COL6A3-204ENST00000392003 MACC1Q6ZN28 852 aa9.43□□□□□ -0.9
COL6A3-204ENST00000392003 RALGPS2Q86X27 583 aaPredicted RBP9.43□□□□□ -0.9
COL6A3-204ENST00000392003 KIAA2013Q8IYS2 634 aa9.43□□□□□ -0.9
COL6A3-204ENST00000392003 DHRSXQ8N5I4 330 aa9.43□□□□□ -0.9
COL6A3-204ENST00000392003 SLC22A17Q8WUG5 538 aa9.43□□□□□ -0.9
COL6A3-204ENST00000392003 COPS8Q99627 209 aa9.43□□□□□ -0.9
COL6A3-204ENST00000392003 THUMPD3Q9BV44 507 aaKnown RBP9.43□□□□□ -0.9
COL6A3-204ENST00000392003 ADI1Q9BV57 179 aa9.43□□□□□ -0.9
COL6A3-204ENST00000392003 PRM3Q9NNZ6 103 aa9.43□□□□□ -0.9
COL6A3-204ENST00000392003 POU2F3Q9UKI9 436 aa9.43□□□□□ -0.9
COL6A3-204ENST00000392003 OAZ3Q9UMX2 235 aa9.43□□□□□ -0.9
COL6A3-204ENST00000392003 COQ6Q9Y2Z9 468 aa9.43□□□□□ -0.9
COL6A3-204ENST00000392003 LRRC72A6NJI9 287 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms