RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 CATSPER2Q96P56 530 aa17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 NR1H4Q96RI1 486 aaPredicted RBP17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 ITM2CQ9NQX7 267 aa17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 COPG1Q9Y678 874 aaKnown RBP17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 SZT2Q5T011 3432 aa17.76■□□□□ 0.43
CCDC88C-203ENST00000389856 REV3LO60673 3130 aa17.75■□□□□ 0.43
CCDC88C-203ENST00000389856 LRRC14BA6NHZ5 514 aa17.75■□□□□ 0.43
CCDC88C-203ENST00000389856 SHISA7A6NL88 538 aa17.75■□□□□ 0.43
CCDC88C-203ENST00000389856 TOR1BO14657 336 aa17.75■□□□□ 0.43
CCDC88C-203ENST00000389856 FPGTO14772 594 aa17.75■□□□□ 0.43
CCDC88C-203ENST00000389856 PEX1O43933 1283 aa17.75■□□□□ 0.43
CCDC88C-203ENST00000389856 SKAP2O75563 359 aaPredicted RBP17.75■□□□□ 0.43
CCDC88C-203ENST00000389856 TSPAN8P19075 237 aa17.75■□□□□ 0.43
CCDC88C-203ENST00000389856 CD72P21854 359 aa17.75■□□□□ 0.43
CCDC88C-203ENST00000389856 NUDT1P36639 197 aa17.75■□□□□ 0.43
CCDC88C-203ENST00000389856 HSPA7P48741 367 aa17.75■□□□□ 0.43
CCDC88C-203ENST00000389856 ABRQ12979 859 aa17.75■□□□□ 0.43
CCDC88C-203ENST00000389856 ART3Q13508 389 aa17.75■□□□□ 0.43
CCDC88C-203ENST00000389856 UNC5DQ6UXZ4 953 aa17.75■□□□□ 0.43
CCDC88C-203ENST00000389856 RPS27LQ71UM5 84 aaKnown RBP17.75■□□□□ 0.43
CCDC88C-203ENST00000389856 FAM124AQ86V42 546 aa17.75■□□□□ 0.43
CCDC88C-203ENST00000389856 RASGRP3Q8IV61 690 aa17.75■□□□□ 0.43
CCDC88C-203ENST00000389856 DLG3Q92796 817 aa17.75■□□□□ 0.43
CCDC88C-203ENST00000389856 FOXJ1Q92949 421 aa17.75■□□□□ 0.43
CCDC88C-203ENST00000389856 C19orf60Q96EN9 201 aa17.75■□□□□ 0.43
CCDC88C-203ENST00000389856 NSUN5Q96P11 429 aaKnown RBP17.75■□□□□ 0.43
CCDC88C-203ENST00000389856 SLC32A1Q9H598 525 aa17.75■□□□□ 0.43
CCDC88C-203ENST00000389856 NOL11Q9H8H0 719 aaKnown RBP17.75■□□□□ 0.43
CCDC88C-203ENST00000389856 LMAN1LQ9HAT1 526 aa17.75■□□□□ 0.43
CCDC88C-203ENST00000389856 MBNL1Q9NR56 388 aaKnown RBP17.75■□□□□ 0.43
CCDC88C-203ENST00000389856 TMEM98Q9Y2Y6 226 aa17.75■□□□□ 0.43
CCDC88C-203ENST00000389856 TMEM233B4DJY2 109 aa17.74■□□□□ 0.43
CCDC88C-203ENST00000389856 AIM2O14862 343 aa17.74■□□□□ 0.43
CCDC88C-203ENST00000389856 TAPBPO15533 448 aa17.74■□□□□ 0.43
CCDC88C-203ENST00000389856 IGLV3-19P01714 112 aa17.74■□□□□ 0.43
CCDC88C-203ENST00000389856 PREPP48147 710 aa17.74■□□□□ 0.43
CCDC88C-203ENST00000389856 ACADVLP49748 655 aa17.74■□□□□ 0.43
CCDC88C-203ENST00000389856 FGL2Q14314 439 aa17.74■□□□□ 0.43
CCDC88C-203ENST00000389856 ANO7Q6IWH7 933 aa17.74■□□□□ 0.43
CCDC88C-203ENST00000389856 TSTD1Q8NFU3 115 aa17.74■□□□□ 0.43
CCDC88C-203ENST00000389856 SLC26A7Q8TE54 656 aa17.74■□□□□ 0.43
CCDC88C-203ENST00000389856 TWIST2Q8WVJ9 160 aa17.74■□□□□ 0.43
CCDC88C-203ENST00000389856 MRPL1Q9BYD6 325 aaKnown RBP17.74■□□□□ 0.43
CCDC88C-203ENST00000389856 VCXQ9H320 206 aa17.74■□□□□ 0.43
CCDC88C-203ENST00000389856 IPPKQ9H8X2 491 aa17.74■□□□□ 0.43
CCDC88C-203ENST00000389856 RIC8BQ9NVN3 520 aa17.74■□□□□ 0.43
CCDC88C-203ENST00000389856 USP36Q9P275 1121 aaKnown RBP17.74■□□□□ 0.43
CCDC88C-203ENST00000389856 ACSL5Q9ULC5 683 aa17.74■□□□□ 0.43
CCDC88C-203ENST00000389856 ANKRD12Q6UB98 2062 aa17.74■□□□□ 0.43
CCDC88C-203ENST00000389856 TMEM202A6NGA9 273 aa17.73■□□□□ 0.43
CCDC88C-203ENST00000389856 CASQ2O14958 399 aaPredicted RBP17.73■□□□□ 0.43
CCDC88C-203ENST00000389856 UBDO15205 165 aa17.73■□□□□ 0.43
CCDC88C-203ENST00000389856 PDE5AO76074 875 aa17.73■□□□□ 0.43
CCDC88C-203ENST00000389856 SEMA4FO95754 770 aa17.73■□□□□ 0.43
CCDC88C-203ENST00000389856 BAG2O95816 211 aa17.73■□□□□ 0.43
CCDC88C-203ENST00000389856 AKT2P31751 481 aa17.73■□□□□ 0.43
CCDC88C-203ENST00000389856 STARD6P59095 220 aa17.73■□□□□ 0.43
CCDC88C-203ENST00000389856 KIAA1024LP59773 190 aa17.73■□□□□ 0.43
CCDC88C-203ENST00000389856 ZNF658BQ4V348 819 aaPredicted RBP17.73■□□□□ 0.43
CCDC88C-203ENST00000389856 PIGGQ5H8A4 983 aa17.73■□□□□ 0.43
CCDC88C-203ENST00000389856 HACD2Q6Y1H2 254 aa17.73■□□□□ 0.43
CCDC88C-203ENST00000389856 MILR1Q7Z6M3 343 aa17.73■□□□□ 0.43
CCDC88C-203ENST00000389856 ZNF547Q8IVP9 402 aa17.73■□□□□ 0.43
CCDC88C-203ENST00000389856 UBALD2Q8IYN6 164 aa17.73■□□□□ 0.43
CCDC88C-203ENST00000389856 KLK6Q92876 244 aa17.73■□□□□ 0.43
CCDC88C-203ENST00000389856 ECSITQ9BQ95 431 aa17.73■□□□□ 0.43
CCDC88C-203ENST00000389856 TMEM79Q9BSE2 394 aa17.73■□□□□ 0.43
CCDC88C-203ENST00000389856 TIMM29Q9BSF4 260 aa17.73■□□□□ 0.43
CCDC88C-203ENST00000389856 APOOQ9BUR5 198 aa17.73■□□□□ 0.43
CCDC88C-203ENST00000389856 C6orf203Q9P0P8 240 aaPredicted RBP17.73■□□□□ 0.43
CCDC88C-203ENST00000389856 OR1A2Q9Y585 309 aa17.73■□□□□ 0.43
CCDC88C-203ENST00000389856 C5orf42Q9H799 3197 aa17.73■□□□□ 0.43
CCDC88C-203ENST00000389856 KANSL1LA0AUZ9 987 aa17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 IFRD1O00458 451 aaPredicted RBP17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 SLC31A1O15431 190 aa17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 ZNF217O75362 1048 aa17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 SMNDC1O75940 238 aaKnown RBP eCLIP17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 EBLN1P0CF75 366 aa17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 HNRNPA2B1P22626 353 aaKnown RBP17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 HTR1BP28222 390 aa17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 MAT2AP31153 395 aaKnown RBP17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 IGFALSP35858 605 aa17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 UBXN2BQ14CS0 331 aa17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 CLEC6AQ6EIG7 209 aa17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 SYVN1Q86TM6 617 aa17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 HPS6Q86YV9 775 aa17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 GALNT13Q8IUC8 556 aa17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 DDIASQ8IXT1 998 aa17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 RCN3Q96D15 328 aa17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 NTMT1Q9BV86 223 aa17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 WDR41Q9HAD4 459 aa17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 LTB4R2Q9NPC1 389 aa17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 ZNHIT2Q9UHR6 403 aa17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 SLC17A4Q9Y2C5 497 aa17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 DNAJC15Q9Y5T4 150 aa17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 A6NHS1 94 aa17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 ARHGEF33A8MVX0 844 aa17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 JUNP05412 331 aaKnown RBP17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 HGFP14210 728 aa17.72■□□□□ 0.43
CCDC88C-203ENST00000389856 ME2P23368 584 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms