RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 PTPRCAPQ14761 206 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 SLC1A5Q15758 541 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 LPAL2Q16609 132 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 LTC4SQ16873 150 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 ZNF800Q2TB10 664 aaPredicted RBP eCLIP4.57□□□□□ -1.683e-6■■■□□ 18.5
SCN1A-202ENST00000375405 WSCD2Q2TBF2 565 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 ARHGAP40Q5TG30 622 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 ZNF470Q6ECI4 717 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 VASNQ6EMK4 673 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 AADACL2Q6P093 401 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 FUT10Q6P4F1 479 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 ADGRF2Q8IZF7 708 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 NUP37Q8NFH4 326 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 SPATA20Q8TB22 786 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 ZCCHC14Q8WYQ9 949 aaKnown RBP4.57□□□□□ -1.68
SCN1A-202ENST00000375405 EDEM1Q92611 657 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 DIO2Q92813 273 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 TMEM208Q9BTX3 173 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 TM6SF2Q9BZW4 377 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 RGCCQ9H4X1 137 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 GREM2Q9H772 168 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 SPACA1Q9HBV2 294 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 SLC39A9Q9NUM3 307 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 LYARQ9NX58 379 aaKnown RBP4.57□□□□□ -1.68
SCN1A-202ENST00000375405 PLK2Q9NYY3 685 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 STUB1Q9UNE7 303 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 SMG5Q9UPR3 1016 aaKnown RBP4.57□□□□□ -1.68
SCN1A-202ENST00000375405 PIAS3Q9Y6X2 628 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 ESPL1Q14674 2120 aa4.57□□□□□ -1.68
SCN1A-202ENST00000375405 ARVCFO00192 962 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 CYP26A1O43174 497 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 NMT2O60551 498 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 FARS2O95363 451 aaKnown RBP4.56□□□□□ -1.68
SCN1A-202ENST00000375405 OTCP00480 354 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 IFI30P13284 250 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 MTHFD2P13995 350 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 FUT4P22083 530 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 PTAFRP25105 342 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 ACVR2AP27037 513 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 CD86P42081 329 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 EFNA5P52803 228 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 NOMO3P69849 1222 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 C6orf120Q7Z4R8 191 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 MCOLN2Q8IZK6 566 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 ZNF283Q8N7M2 679 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 CNEP1R1Q8N9A8 125 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 PROKR2Q8NFJ6 384 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 ZNF461Q8TAF7 563 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 PPP1R35Q8TAP8 253 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 PNPT1Q8TCS8 783 aaKnown RBP4.56□□□□□ -1.68
SCN1A-202ENST00000375405 THEM6Q8WUY1 208 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 ZNF75CPQ92670 426 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-202ENST00000375405 MYO19Q96H55 970 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 TBX5Q99593 518 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 SNRNP25Q9BV90 132 aaKnown RBP4.56□□□□□ -1.68
SCN1A-202ENST00000375405 NUSAP1Q9BXS6 441 aaKnown RBP4.56□□□□□ -1.68
SCN1A-202ENST00000375405 SLC52A2Q9HAB3 445 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 POPDC2Q9HBU9 364 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 CCDC167Q9P0B6 97 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 SRRDQ9UH36 339 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 LEF1Q9UJU2 399 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-202ENST00000375405 TIMM13Q9Y5L4 95 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-202ENST00000375405 B3GALT1Q9Y5Z6 326 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 YEATS2Q9ULM3 1422 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 NUDT19A8MXV4 375 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 CCL16O15467 120 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 DNPH1O43598 174 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 RAMP2O60895 175 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 RPP14O95059 124 aaKnown RBP4.56□□□□□ -1.68
SCN1A-202ENST00000375405 CXCL14O95715 111 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 ASGR1P07306 291 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 ITGB5P18084 799 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 EPHA1P21709 976 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 CRHBPP24387 322 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 OTX2P32243 289 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 RAB13P51153 203 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 NR1H2P55055 460 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 BIDP55957 195 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 SMIM11AP58511 58 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 CSNK2A1P68400 391 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-202ENST00000375405 PRKCEQ02156 737 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 ADGRE1Q14246 886 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 PIGHQ14442 188 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-202ENST00000375405 DRAP1Q14919 205 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-202ENST00000375405 ACSBG2Q5FVE4 666 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 ARL9Q6T311 187 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 RHOUQ7L0Q8 258 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 SLC44A3Q8N4M1 653 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 ZNF540Q8NDQ6 660 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 CSNK2A3Q8NEV1 391 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 HSPBAP1Q96EW2 488 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 MRAP2Q96G30 205 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 TOE1Q96GM8 510 aaKnown RBP4.56□□□□□ -1.68
SCN1A-202ENST00000375405 OR1F2PQ96R84 312 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 TMEM117Q9H0C3 514 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 PPA2Q9H2U2 334 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 TIGARQ9NQ88 270 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 SEC14L3Q9UDX4 400 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 SLC7A11Q9UPY5 501 aa4.56□□□□□ -1.68
SCN1A-202ENST00000375405 CAMK2AQ9UQM7 478 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms