RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 APOL4Q9BPW4 351 aa20.69■□□□□ 0.9
UPF3A-202ENST00000375299 CPPED1Q9BRF8 314 aaPredicted RBP20.69■□□□□ 0.9
UPF3A-202ENST00000375299 ABCB10Q9NRK6 738 aa20.69■□□□□ 0.9
UPF3A-202ENST00000375299 COMMD10Q9Y6G5 202 aa20.69■□□□□ 0.9
UPF3A-202ENST00000375299 CLDN24A6NM45 220 aa20.68■□□□□ 0.9
UPF3A-202ENST00000375299 ARVCFO00192 962 aa20.68■□□□□ 0.9
UPF3A-202ENST00000375299 TBX18O95935 607 aa20.68■□□□□ 0.9
UPF3A-202ENST00000375299 GSNP06396 782 aa20.68■□□□□ 0.9
UPF3A-202ENST00000375299 HMBSP08397 361 aa20.68■□□□□ 0.9
UPF3A-202ENST00000375299 LPOP22079 712 aaPredicted RBP20.68■□□□□ 0.9
UPF3A-202ENST00000375299 TGFBR1P36897 503 aa20.68■□□□□ 0.9
UPF3A-202ENST00000375299 DAPP51397 102 aa20.68■□□□□ 0.9
UPF3A-202ENST00000375299 CARD16Q5EG05 197 aa20.68■□□□□ 0.9
UPF3A-202ENST00000375299 CACHD1Q5VU97 1274 aa20.68■□□□□ 0.9
UPF3A-202ENST00000375299 ADAMTSL2Q86TH1 951 aa20.68■□□□□ 0.9
UPF3A-202ENST00000375299 MIB1Q86YT6 1006 aa20.68■□□□□ 0.9
UPF3A-202ENST00000375299 C10orf111Q8N326 155 aa20.68■□□□□ 0.9
UPF3A-202ENST00000375299 CARNMT1Q8N4J0 409 aa20.68■□□□□ 0.9
UPF3A-202ENST00000375299 OR10Q1Q8NGQ4 319 aa20.68■□□□□ 0.9
UPF3A-202ENST00000375299 ZHX1-C8orf76Q96EF9 292 aa20.68■□□□□ 0.9
UPF3A-202ENST00000375299 SUSD3Q96L08 255 aa20.68■□□□□ 0.9
UPF3A-202ENST00000375299 OR52E6Q96RD3 313 aa20.68■□□□□ 0.9
UPF3A-202ENST00000375299 FBXO44Q9H4M3 255 aa20.68■□□□□ 0.9
UPF3A-202ENST00000375299 SLC6A13Q9NSD5 602 aa20.68■□□□□ 0.9
UPF3A-202ENST00000375299 KLHL3Q9UH77 587 aa20.68■□□□□ 0.9
UPF3A-202ENST00000375299 SLCO3A1Q9UIG8 710 aa20.68■□□□□ 0.9
UPF3A-202ENST00000375299 TSR3Q9UJK0 312 aaKnown RBP20.68■□□□□ 0.9
UPF3A-202ENST00000375299 GREB1Q4ZG55 1949 aa20.68■□□□□ 0.9
UPF3A-202ENST00000375299 CD36P16671 472 aa20.68■□□□□ 0.9
UPF3A-202ENST00000375299 TYMPP19971 482 aa20.68■□□□□ 0.9
UPF3A-202ENST00000375299 LAPTM4AQ15012 233 aa20.68■□□□□ 0.9
UPF3A-202ENST00000375299 DDR2Q16832 855 aa20.68■□□□□ 0.9
UPF3A-202ENST00000375299 PLEKHG6Q3KR16 790 aa20.68■□□□□ 0.9
UPF3A-202ENST00000375299 SBSNQ6UWP8 590 aa20.68■□□□□ 0.9
UPF3A-202ENST00000375299 AKAP14Q86UN6 197 aa20.68■□□□□ 0.9
UPF3A-202ENST00000375299 HTRA1Q92743 480 aa20.68■□□□□ 0.9
UPF3A-202ENST00000375299 EPS8L2Q9H6S3 715 aa20.68■□□□□ 0.9
UPF3A-202ENST00000375299 ZFP14Q9HCL3 533 aa20.68■□□□□ 0.9
UPF3A-202ENST00000375299 SPATA7Q9P0W8 599 aa20.68■□□□□ 0.9
UPF3A-202ENST00000375299 PNMA8BQ9ULN7 279 aaPredicted RBP20.68■□□□□ 0.9
UPF3A-202ENST00000375299 Q9Y3F1 56 aa20.68■□□□□ 0.9
UPF3A-202ENST00000375299 IQCF5A8MTL0 148 aa20.67■□□□□ 0.9
UPF3A-202ENST00000375299 EFCAB9A8MZ26 197 aa20.67■□□□□ 0.9
UPF3A-202ENST00000375299 F8W810 466 aa20.67■□□□□ 0.9
UPF3A-202ENST00000375299 H0Y626 953 aa20.67■□□□□ 0.9
UPF3A-202ENST00000375299 SLC28A1O00337 649 aa20.67■□□□□ 0.9
UPF3A-202ENST00000375299 TRIM16O95361 564 aa20.67■□□□□ 0.9
UPF3A-202ENST00000375299 CTSHP09668 335 aa20.67■□□□□ 0.9
UPF3A-202ENST00000375299 RGRP47804 291 aa20.67■□□□□ 0.9
UPF3A-202ENST00000375299 CLCN7P51798 805 aa20.67■□□□□ 0.9
UPF3A-202ENST00000375299 PHC1P78364 1004 aa20.67■□□□□ 0.9
UPF3A-202ENST00000375299 SMN1Q16637 294 aaKnown RBP20.67■□□□□ 0.9
UPF3A-202ENST00000375299 KDM4DQ6B0I6 523 aa20.67■□□□□ 0.9
UPF3A-202ENST00000375299 CEP68Q76N32 757 aa20.67■□□□□ 0.9
UPF3A-202ENST00000375299 KIAA1958Q8N8K9 716 aa20.67■□□□□ 0.9
UPF3A-202ENST00000375299 EHD1Q9H4M9 534 aa20.67■□□□□ 0.9
UPF3A-202ENST00000375299 SIAEQ9HAT2 523 aa20.67■□□□□ 0.9
UPF3A-202ENST00000375299 FNDC3AQ9Y2H6 1198 aaKnown RBP20.67■□□□□ 0.9
UPF3A-202ENST00000375299 CHD5Q8TDI0 1954 aa20.67■□□□□ 0.9
UPF3A-202ENST00000375299 OR2A25A4D2G3 310 aa20.67■□□□□ 0.9
UPF3A-202ENST00000375299 FFAR2O15552 330 aa20.67■□□□□ 0.9
UPF3A-202ENST00000375299 NUAK1O60285 661 aa20.67■□□□□ 0.9
UPF3A-202ENST00000375299 ESR1P03372 595 aa20.67■□□□□ 0.9
UPF3A-202ENST00000375299 PIK3CGP48736 1102 aa20.67■□□□□ 0.9
UPF3A-202ENST00000375299 HSPA7P48741 367 aa20.67■□□□□ 0.9
UPF3A-202ENST00000375299 HMGCS1Q01581 520 aa20.67■□□□□ 0.9
UPF3A-202ENST00000375299 TUSC3Q13454 348 aa20.67■□□□□ 0.9
UPF3A-202ENST00000375299 MAD2L1BPQ15013 274 aaPredicted RBP20.67■□□□□ 0.9
UPF3A-202ENST00000375299 ZNF181Q2M3W8 571 aa20.67■□□□□ 0.9
UPF3A-202ENST00000375299 SUSD1Q6UWL2 747 aa20.67■□□□□ 0.9
UPF3A-202ENST00000375299 SNX20Q7Z614 316 aa20.67■□□□□ 0.9
UPF3A-202ENST00000375299 PDLIM5Q96HC4 596 aaKnown RBP20.67■□□□□ 0.9
UPF3A-202ENST00000375299 CENPFP49454 3210 aa20.67■□□□□ 0.9
UPF3A-202ENST00000375299 GLTPD2A6NH11 291 aa20.66■□□□□ 0.9
UPF3A-202ENST00000375299 FFAR3O14843 346 aa20.66■□□□□ 0.9
UPF3A-202ENST00000375299 GPR42O15529 346 aa20.66■□□□□ 0.9
UPF3A-202ENST00000375299 ERN1O75460 977 aaKnown RBP20.66■□□□□ 0.9
UPF3A-202ENST00000375299 PRLP01236 227 aa20.66■□□□□ 0.9
UPF3A-202ENST00000375299 HOXD9P28356 352 aaPredicted RBP20.66■□□□□ 0.9
UPF3A-202ENST00000375299 GGT5P36269 586 aa20.66■□□□□ 0.9
UPF3A-202ENST00000375299 GNPDA1P46926 289 aa20.66■□□□□ 0.9
UPF3A-202ENST00000375299 ARHGDIAP52565 204 aa20.66■□□□□ 0.9
UPF3A-202ENST00000375299 GTF2H3Q13889 308 aa20.66■□□□□ 0.9
UPF3A-202ENST00000375299 TTC29Q8NA56 475 aaPredicted RBP20.66■□□□□ 0.9
UPF3A-202ENST00000375299 LPCAT1Q8NF37 534 aa20.66■□□□□ 0.9
UPF3A-202ENST00000375299 DNAJB8Q8NHS0 232 aa20.66■□□□□ 0.9
UPF3A-202ENST00000375299 CINPQ9BW66 212 aaPredicted RBP20.66■□□□□ 0.9
UPF3A-202ENST00000375299 DCSTAMPQ9H295 470 aa20.66■□□□□ 0.9
UPF3A-202ENST00000375299 ASIC5Q9NY37 505 aa20.66■□□□□ 0.9
UPF3A-202ENST00000375299 A0A0D9SEW6 157 aa20.66■□□□□ 0.9
UPF3A-202ENST00000375299 A8MU76 341 aa20.66■□□□□ 0.9
UPF3A-202ENST00000375299 RAD51BO15315 384 aa20.66■□□□□ 0.9
UPF3A-202ENST00000375299 INSIG1O15503 277 aa20.66■□□□□ 0.9
UPF3A-202ENST00000375299 PAX3P23760 479 aa20.66■□□□□ 0.9
UPF3A-202ENST00000375299 RCVRNP35243 200 aa20.66■□□□□ 0.9
UPF3A-202ENST00000375299 SF3B4Q15427 424 aaKnown RBP eCLIP20.66■□□□□ 0.92e-10■■■■■ 27.3
UPF3A-202ENST00000375299 LRIF1Q5T3J3 769 aa20.66■□□□□ 0.9
UPF3A-202ENST00000375299 OR2T5Q6IEZ7 315 aa20.66■□□□□ 0.9
UPF3A-202ENST00000375299 TUBA3EQ6PEY2 450 aa20.66■□□□□ 0.9
UPF3A-202ENST00000375299 OR2T29Q8NH02 315 aa20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms