RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 A0A0J9YVX5 310 aa19.16■□□□□ 0.66
CCDC88B-202ENST00000356786 TRIM3O75382 744 aaPredicted RBP19.16■□□□□ 0.66
CCDC88B-202ENST00000356786 CDK14O94921 469 aa19.16■□□□□ 0.66
CCDC88B-202ENST00000356786 CCNDBP1O95273 360 aa19.16■□□□□ 0.66
CCDC88B-202ENST00000356786 ITGB1P05556 798 aa19.16■□□□□ 0.66
CCDC88B-202ENST00000356786 CD247P20963 164 aa19.16■□□□□ 0.66
CCDC88B-202ENST00000356786 TUSC3Q13454 348 aa19.16■□□□□ 0.66
CCDC88B-202ENST00000356786 OLIG2Q13516 323 aa19.16■□□□□ 0.66
CCDC88B-202ENST00000356786 AMIGO3Q86WK7 504 aa19.16■□□□□ 0.66
CCDC88B-202ENST00000356786 ARRDC4Q8NCT1 418 aa19.16■□□□□ 0.66
CCDC88B-202ENST00000356786 OR10H4Q8NGA5 316 aa19.16■□□□□ 0.66
CCDC88B-202ENST00000356786 MTERF1Q99551 399 aaKnown RBP19.16■□□□□ 0.66
CCDC88B-202ENST00000356786 RGS17Q9UGC6 210 aaPredicted RBP19.16■□□□□ 0.66
CCDC88B-202ENST00000356786 MYH10P35580 1976 aa19.16■□□□□ 0.66
CCDC88B-202ENST00000356786 RIIAD1A6NNX1 92 aa19.16■□□□□ 0.66
CCDC88B-202ENST00000356786 TSPAN1O60635 241 aa19.16■□□□□ 0.66
CCDC88B-202ENST00000356786 HOXC6P09630 235 aa19.16■□□□□ 0.66
CCDC88B-202ENST00000356786 TACR2P21452 398 aa19.16■□□□□ 0.66
CCDC88B-202ENST00000356786 RABGGTBP53611 331 aa19.16■□□□□ 0.66
CCDC88B-202ENST00000356786 CEACAM7Q14002 265 aa19.16■□□□□ 0.66
CCDC88B-202ENST00000356786 SYPL2Q5VXT5 272 aa19.16■□□□□ 0.66
CCDC88B-202ENST00000356786 ASCC1Q8N9N2 400 aaKnown RBP19.16■□□□□ 0.66
CCDC88B-202ENST00000356786 PIGXQ8TBF5 258 aa19.16■□□□□ 0.66
CCDC88B-202ENST00000356786 ZNF641Q96N77 438 aaPredicted RBP19.16■□□□□ 0.66
CCDC88B-202ENST00000356786 AIF1LQ9BQI0 150 aa19.16■□□□□ 0.66
CCDC88B-202ENST00000356786 IGKV6D-41A0A0C4DH26 115 aa19.15■□□□□ 0.66
CCDC88B-202ENST00000356786 CSF2P04141 144 aa19.15■□□□□ 0.66
CCDC88B-202ENST00000356786 CMPK2Q5EBM0 449 aa19.15■□□□□ 0.66
CCDC88B-202ENST00000356786 RBM20Q5T481 1227 aaKnown RBP19.15■□□□□ 0.66
CCDC88B-202ENST00000356786 MED27Q6P2C8 311 aa19.15■□□□□ 0.66
CCDC88B-202ENST00000356786 ZUFSPQ96AP4 578 aa19.15■□□□□ 0.66
CCDC88B-202ENST00000356786 LPIN3Q9BQK8 851 aa19.15■□□□□ 0.66
CCDC88B-202ENST00000356786 ABCG2Q9UNQ0 655 aa19.15■□□□□ 0.66
CCDC88B-202ENST00000356786 INSIG1O15503 277 aa19.15■□□□□ 0.66
CCDC88B-202ENST00000356786 ECI2O75521 394 aa19.15■□□□□ 0.66
CCDC88B-202ENST00000356786 ZNF24P17028 368 aa19.15■□□□□ 0.66
CCDC88B-202ENST00000356786 PPP1R16AQ96I34 528 aa19.15■□□□□ 0.66
CCDC88B-202ENST00000356786 BARD1Q99728 777 aaKnown RBP19.15■□□□□ 0.66
CCDC88B-202ENST00000356786 HERC2P3Q9BVR0 1158 aa19.15■□□□□ 0.66
CCDC88B-202ENST00000356786 MRPL17Q9NRX2 175 aaKnown RBP19.15■□□□□ 0.66
CCDC88B-202ENST00000356786 RDH8Q9NYR8 311 aa19.15■□□□□ 0.66
CCDC88B-202ENST00000356786 ARL5AQ9Y689 179 aa19.15■□□□□ 0.66
CCDC88B-202ENST00000356786 RGPD2P0DJD1 1756 aa19.15■□□□□ 0.66
CCDC88B-202ENST00000356786 MAGEB3O15480 346 aa19.15■□□□□ 0.66
CCDC88B-202ENST00000356786 C22orf31O95567 290 aa19.15■□□□□ 0.66
CCDC88B-202ENST00000356786 SLC35G1Q2M3R5 365 aa19.15■□□□□ 0.66
CCDC88B-202ENST00000356786 TMEM236Q5W0B7 351 aa19.15■□□□□ 0.66
CCDC88B-202ENST00000356786 FRRS1Q6ZNA5 592 aa19.15■□□□□ 0.66
CCDC88B-202ENST00000356786 CIR1Q86X95 450 aaPredicted RBP19.15■□□□□ 0.66
CCDC88B-202ENST00000356786 SLITRK4Q8IW52 837 aa19.15■□□□□ 0.66
CCDC88B-202ENST00000356786 BHLHE41Q9C0J9 482 aaPredicted RBP19.15■□□□□ 0.66
CCDC88B-202ENST00000356786 OR51V1Q9H2C8 321 aa19.15■□□□□ 0.66
CCDC88B-202ENST00000356786 LAPTM4AQ15012 233 aa19.15■□□□□ 0.66
CCDC88B-202ENST00000356786 CDCA2Q69YH5 1023 aaPredicted RBP19.15■□□□□ 0.66
CCDC88B-202ENST00000356786 SMARCD3Q6STE5 483 aa19.15■□□□□ 0.66
CCDC88B-202ENST00000356786 SLC37A3Q8NCC5 494 aa19.15■□□□□ 0.66
CCDC88B-202ENST00000356786 SLC6A15Q9H2J7 730 aa19.15■□□□□ 0.66
CCDC88B-202ENST00000356786 RIMKLBQ9ULI2 386 aa19.15■□□□□ 0.66
CCDC88B-202ENST00000356786 FFAR2O15552 330 aa19.14■□□□□ 0.66
CCDC88B-202ENST00000356786 NIPSNAP2O75323 286 aa19.14■□□□□ 0.66
CCDC88B-202ENST00000356786 ELFN1P0C7U0 828 aa19.14■□□□□ 0.66
CCDC88B-202ENST00000356786 FPR1P21462 350 aa19.14■□□□□ 0.66
CCDC88B-202ENST00000356786 HSPB3Q12988 150 aa19.14■□□□□ 0.66
CCDC88B-202ENST00000356786 AGMOQ6ZNB7 445 aa19.14■□□□□ 0.66
CCDC88B-202ENST00000356786 PRR23CQ6ZRP0 262 aa19.14■□□□□ 0.66
CCDC88B-202ENST00000356786 ADGRG2Q8IZP9 1017 aa19.14■□□□□ 0.66
CCDC88B-202ENST00000356786 SHISA4Q96DD7 197 aa19.14■□□□□ 0.66
CCDC88B-202ENST00000356786 BIRC8Q96P09 236 aa19.14■□□□□ 0.66
CCDC88B-202ENST00000356786 MMP27Q9H306 513 aa19.14■□□□□ 0.66
CCDC88B-202ENST00000356786 NEK6Q9HC98 313 aa19.14■□□□□ 0.66
CCDC88B-202ENST00000356786 TIGARQ9NQ88 270 aa19.14■□□□□ 0.66
CCDC88B-202ENST00000356786 EBF1Q9UH73 591 aa19.14■□□□□ 0.66
CCDC88B-202ENST00000356786 ROBO1Q9Y6N7 1651 aa19.14■□□□□ 0.66
CCDC88B-202ENST00000356786 DENRO43583 198 aaKnown RBP19.14■□□□□ 0.65
CCDC88B-202ENST00000356786 OPN1SWP03999 348 aa19.14■□□□□ 0.65
CCDC88B-202ENST00000356786 NDST2P52849 883 aa19.14■□□□□ 0.65
CCDC88B-202ENST00000356786 DUSP4Q13115 394 aa19.14■□□□□ 0.65
CCDC88B-202ENST00000356786 KCNAB2Q13303 367 aa19.14■□□□□ 0.65
CCDC88B-202ENST00000356786 HIST2H2ABQ8IUE6 130 aaPredicted RBP19.14■□□□□ 0.65
CCDC88B-202ENST00000356786 SLC9A6Q92581 669 aa19.14■□□□□ 0.65
CCDC88B-202ENST00000356786 COL21A1Q96P44 957 aa19.14■□□□□ 0.65
CCDC88B-202ENST00000356786 CDC14AQ9UNH5 594 aa19.14■□□□□ 0.65
CCDC88B-202ENST00000356786 ACADMP11310 421 aa19.14■□□□□ 0.65
CCDC88B-202ENST00000356786 ACSL1P33121 698 aa19.14■□□□□ 0.65
CCDC88B-202ENST00000356786 AP2S1P53680 142 aaPredicted RBP19.14■□□□□ 0.65
CCDC88B-202ENST00000356786 GNG2P59768 71 aa19.14■□□□□ 0.65
CCDC88B-202ENST00000356786 ANKDD1AQ495B1 522 aa19.14■□□□□ 0.65
CCDC88B-202ENST00000356786 BTN2A1Q7KYR7 527 aa19.14■□□□□ 0.65
CCDC88B-202ENST00000356786 CAND1Q86VP6 1230 aaKnown RBP19.14■□□□□ 0.65
CCDC88B-202ENST00000356786 HDAC2Q92769 488 aaKnown RBP19.14■□□□□ 0.65
CCDC88B-202ENST00000356786 ANKHQ9HCJ1 492 aa19.14■□□□□ 0.65
CCDC88B-202ENST00000356786 ZNF282Q9UDV7 671 aaPredicted RBP19.14■□□□□ 0.65
CCDC88B-202ENST00000356786 NUP50Q9UKX7 468 aa19.14■□□□□ 0.65
CCDC88B-202ENST00000356786 RGPD1P0DJD0 1748 aa19.14■□□□□ 0.65
CCDC88B-202ENST00000356786 LRRC37A3O60309 1634 aa19.14■□□□□ 0.65
CCDC88B-202ENST00000356786 SETD1AO15047 1707 aaKnown RBP19.14■□□□□ 0.65
CCDC88B-202ENST00000356786 OR2AG2A6NM03 316 aa19.14■□□□□ 0.65
CCDC88B-202ENST00000356786 ZNF432O94892 652 aa19.14■□□□□ 0.65
CCDC88B-202ENST00000356786 IL10RBQ08334 325 aa19.14■□□□□ 0.65
CCDC88B-202ENST00000356786 LARS2Q15031 903 aaKnown RBP19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms