RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 BCL7CQ8WUZ0 217 aaPredicted RBP9.93□□□□□ -0.82
USP54-201ENST00000339859 SLC39A13Q96H72 371 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 CDX2Q99626 313 aaPredicted RBP9.93□□□□□ -0.82
USP54-201ENST00000339859 TBCDQ9BTW9 1192 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 SLC29A3Q9BZD2 475 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 CXCL16Q9H2A7 254 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 CLCA3PQ9Y6N3 262 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 POLR2AP24928 1970 aaKnown RBP9.93□□□□□ -0.82
USP54-201ENST00000339859 A0A1W2PPC1 479 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 C2CD4DB7Z1M9 353 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 OR4F21O95013 312 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 CD38P28907 300 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 PREPP48147 710 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 PLA2G16P53816 162 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 BTN3A2P78410 334 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 LRP8Q14114 963 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 UNC5DQ6UXZ4 953 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 RP9Q8TA86 221 aaKnown RBP9.93□□□□□ -0.82
USP54-201ENST00000339859 TGM7Q96PF1 710 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 MYADMQ96S97 322 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 MMADHCQ9H3L0 296 aaPredicted RBP9.93□□□□□ -0.82
USP54-201ENST00000339859 LYARQ9NX58 379 aaKnown RBP9.93□□□□□ -0.82
USP54-201ENST00000339859 SLC17A7Q9P2U7 560 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 ATXN2Q99700 1313 aaKnown RBP9.93□□□□□ -0.82
USP54-201ENST00000339859 MLIPQ5VWP3 458 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 TRIM69Q86WT6 500 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 MAT2BQ9NZL9 334 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 DKK3Q9UBP4 350 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 ITPKBP27987 946 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 SERPINB3P29508 390 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 KIR3DL1P43629 444 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 PXNP49023 591 aaPredicted RBP9.93□□□□□ -0.82
USP54-201ENST00000339859 ADAM15Q13444 863 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 LARS2Q15031 903 aaKnown RBP9.93□□□□□ -0.82
USP54-201ENST00000339859 TTMPQ5BVD1 217 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 TMEM109Q9BVC6 243 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 SAR1AQ9NR31 198 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 C1orf109Q9NX04 203 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 OR1A2Q9Y585 309 aa9.93□□□□□ -0.82
USP54-201ENST00000339859 LYPLA1O75608 230 aaPredicted RBP9.92□□□□□ -0.82
USP54-201ENST00000339859 WFS1O76024 890 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 MPSTP25325 297 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 CTHP32929 405 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 HHEXQ03014 270 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 SLC10A2Q12908 348 aaPredicted RBP9.92□□□□□ -0.82
USP54-201ENST00000339859 NR1D2Q14995 579 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 TBCELQ5QJ74 424 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 ZNF648Q5T619 568 aaPredicted RBP9.92□□□□□ -0.82
USP54-201ENST00000339859 NPWQ8N729 165 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 ATG16L2Q8NAA4 619 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 POMGNT2Q8NAT1 580 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 EEF1AKMT1Q8WVE0 214 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 EDAQ92838 391 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 MECRQ9BV79 373 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 EQTNQ9NQ60 294 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 RARRES3Q9UL19 164 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 HHLA1C9JL84 531 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 CAPN1P07384 714 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 SLC6A2P23975 617 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 KHKP50053 298 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 PGDP52209 483 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 TMC8Q8IU68 726 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 SDC3O75056 442 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 SEC24DO94855 1032 aaPredicted RBP9.92□□□□□ -0.82
USP54-201ENST00000339859 IMPDH1P20839 514 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 CCKBRP32239 447 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 HMGCLP35914 325 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 NIPAL4Q0D2K0 466 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 NADSYN1Q6IA69 706 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 TRMT10BQ6PF06 316 aaKnown RBP9.92□□□□□ -0.82
USP54-201ENST00000339859 PARS2Q7L3T8 475 aaKnown RBP9.92□□□□□ -0.82
USP54-201ENST00000339859 AMIGO1Q86WK6 493 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 CBARPQ8N350 705 aaPredicted RBP9.92□□□□□ -0.82
USP54-201ENST00000339859 OR52L1Q8NGH7 329 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 JSRP1Q96MG2 331 aaPredicted RBP9.92□□□□□ -0.82
USP54-201ENST00000339859 HDAC8Q9BY41 377 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 IL21RQ9HBE5 538 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 COQ9O75208 318 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 FBLP22087 321 aaKnown RBP9.92□□□□□ -0.82
USP54-201ENST00000339859 HLA-FP30511 346 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 MPIP34949 423 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 IL12RB1P42701 662 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 IRF4Q15306 451 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 AGTRAPQ6RW13 159 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 ZC3HC1Q86WB0 502 aaKnown RBP9.92□□□□□ -0.82
USP54-201ENST00000339859 ZDHHC14Q8IZN3 488 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 LIX1Q8N485 282 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 DTX3LQ8TDB6 740 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 ZBED6CLQ96FA7 236 aaPredicted RBP9.92□□□□□ -0.82
USP54-201ENST00000339859 TSSK3Q96PN8 268 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 DHRS7Q9Y394 339 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 TIMM22Q9Y584 194 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 DFNA5O60443 496 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 SERPINA6P08185 405 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 BPIP17213 487 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 HOXB6P17509 224 aaKnown RBP9.92□□□□□ -0.82
USP54-201ENST00000339859 POLR2JP52435 117 aaKnown RBP9.92□□□□□ -0.82
USP54-201ENST00000339859 PLGLB1Q02325 96 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 ZNF542PQ5EBM4 170 aa9.92□□□□□ -0.82
USP54-201ENST00000339859 GCNT7Q6ZNI0 430 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms