RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 MRPL48Q96GC5 212 aaKnown RBP6.72□□□□□ -1.33
SF3B1-201ENST00000335508 RNF145Q96MT1 663 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 PHF7Q9BWX1 381 aaPredicted RBP6.72□□□□□ -1.33
SF3B1-201ENST00000335508 SMG9Q9H0W8 520 aaKnown RBP6.72□□□□□ -1.33
SF3B1-201ENST00000335508 OR10H1Q9Y4A9 318 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 TIMM22Q9Y584 194 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 INTS1Q8N201 2190 aaKnown RBP6.72□□□□□ -1.33
SF3B1-201ENST00000335508 DOCK2Q92608 1830 aa6.72□□□□□ -1.33
SF3B1-201ENST00000335508 PRSS51A0A1B0GVH4 220 aa6.71□□□□□ -1.33
SF3B1-201ENST00000335508 KLF8O95600 359 aaPredicted RBP6.71□□□□□ -1.33
SF3B1-201ENST00000335508 C6P13671 934 aa6.71□□□□□ -1.33
SF3B1-201ENST00000335508 GSTM2P28161 218 aa6.71□□□□□ -1.33
SF3B1-201ENST00000335508 CCR8P51685 355 aa6.71□□□□□ -1.33
SF3B1-201ENST00000335508 TXNL4AP83876 142 aaKnown RBP6.71□□□□□ -1.33
SF3B1-201ENST00000335508 ZNF234Q14588 700 aa6.71□□□□□ -1.33
SF3B1-201ENST00000335508 KCTD11Q693B1 232 aa6.71□□□□□ -1.33
SF3B1-201ENST00000335508 OGFOD2Q6N063 350 aa6.71□□□□□ -1.33
SF3B1-201ENST00000335508 CHRDL2Q6WN34 429 aa6.71□□□□□ -1.33
SF3B1-201ENST00000335508 FRMD7Q6ZUT3 714 aa6.71□□□□□ -1.33
SF3B1-201ENST00000335508 APCDD1Q8J025 514 aa6.71□□□□□ -1.33
SF3B1-201ENST00000335508 SPATA6LQ8N4H0 392 aa6.71□□□□□ -1.33
SF3B1-201ENST00000335508 DHRSXQ8N5I4 330 aa6.71□□□□□ -1.33
SF3B1-201ENST00000335508 RIT1Q92963 219 aa6.71□□□□□ -1.33
SF3B1-201ENST00000335508 NEUROD4Q9HD90 331 aa6.71□□□□□ -1.33
SF3B1-201ENST00000335508 TREX1Q9NSU2 369 aa6.71□□□□□ -1.33
SF3B1-201ENST00000335508 FAM234BA2RU67 622 aa6.71□□□□□ -1.33
SF3B1-201ENST00000335508 STMND1H3BQB6 276 aa6.71□□□□□ -1.33
SF3B1-201ENST00000335508 CDC7O00311 574 aa6.71□□□□□ -1.33
SF3B1-201ENST00000335508 FDXRP22570 491 aa6.71□□□□□ -1.33
SF3B1-201ENST00000335508 YPEL5P62699 121 aa6.71□□□□□ -1.33
SF3B1-201ENST00000335508 EMX2Q04743 252 aa6.71□□□□□ -1.33
SF3B1-201ENST00000335508 TECRLQ5HYJ1 363 aa6.71□□□□□ -1.33
SF3B1-201ENST00000335508 CRTC1Q6UUV9 634 aa6.71□□□□□ -1.33
SF3B1-201ENST00000335508 USP30Q70CQ3 517 aa6.71□□□□□ -1.33
SF3B1-201ENST00000335508 TMCO2Q7Z6W1 182 aaPredicted RBP6.71□□□□□ -1.33
SF3B1-201ENST00000335508 TP53INP2Q8IXH6 220 aa6.71□□□□□ -1.33
SF3B1-201ENST00000335508 GPR156Q8NFN8 814 aa6.71□□□□□ -1.33
SF3B1-201ENST00000335508 OR10G6Q8NH81 332 aa6.71□□□□□ -1.33
SF3B1-201ENST00000335508 PIH1D2Q8WWB5 315 aa6.71□□□□□ -1.33
SF3B1-201ENST00000335508 FAM3CQ92520 227 aa6.71□□□□□ -1.33
SF3B1-201ENST00000335508 TEFMQ96QE5 360 aaKnown RBP6.71□□□□□ -1.33
SF3B1-201ENST00000335508 CCDC90BQ9GZT6 254 aa6.71□□□□□ -1.33
SF3B1-201ENST00000335508 KCNH6Q9H252 994 aa6.71□□□□□ -1.33
SF3B1-201ENST00000335508 ZCCHC3Q9NUD5 404 aaKnown RBP6.71□□□□□ -1.33
SF3B1-201ENST00000335508 ZSCAN32Q9NX65 697 aa6.71□□□□□ -1.33
SF3B1-201ENST00000335508 OR6C2Q9NZP2 312 aa6.71□□□□□ -1.33
SF3B1-201ENST00000335508 A0A1W2PP55 124 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 OR10H2O60403 315 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 GABBR2O75899 941 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 ARHGEF15O94989 841 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 SIX3O95343 332 aaPredicted RBP6.71□□□□□ -1.34
SF3B1-201ENST00000335508 AGR2O95994 175 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 BPIP17213 487 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 CXCL12P48061 93 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 MANFP55145 182 aaKnown RBP6.71□□□□□ -1.34
SF3B1-201ENST00000335508 ABHD18Q0P651 414 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 SUZ12Q15022 739 aaKnown RBP6.71□□□□□ -1.34
SF3B1-201ENST00000335508 COQ5Q5HYK3 327 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 DOCK3Q8IZD9 2030 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 TCEAL4Q96EI5 215 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 C1orf50Q9BV19 199 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 EPHX3Q9H6B9 360 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 PREBQ9HCU5 417 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 HCFC1R1Q9NWW0 138 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 FAM120CQ9NX05 1096 aaKnown RBP6.71□□□□□ -1.34
SF3B1-201ENST00000335508 PHF11Q9UIL8 331 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 STOML2Q9UJZ1 356 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 BTRCQ9Y297 605 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 ZNF780BQ9Y6R6 833 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 TMEM150CB9EJG8 249 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 FAM47E-STBD1D6RA91 191 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 LAMTOR5O43504 91 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 NR2F1P10589 423 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 CR2P20023 1033 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 SLC6A2P23975 617 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 GUCA1AP43080 201 aaPredicted RBP6.71□□□□□ -1.34
SF3B1-201ENST00000335508 RANBP1P43487 201 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 NME5P56597 212 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 EEFSECP57772 596 aaKnown RBP6.71□□□□□ -1.34
SF3B1-201ENST00000335508 FOXM1Q08050 763 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 GRM2Q14416 872 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 SLC9A5Q14940 896 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 NET1Q7Z628 596 aaPredicted RBP6.71□□□□□ -1.34
SF3B1-201ENST00000335508 IGDCC3Q8IVU1 814 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 OXR1Q8N573 874 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 RNF148Q8N7C7 305 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 ZNF781Q8N8C0 355 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 DDHD1Q8NEL9 900 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 HLA-CQ95604 372 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 ZNF689Q96CS4 500 aaPredicted RBP6.71□□□□□ -1.34
SF3B1-201ENST00000335508 SLC12A9Q9BXP2 914 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 THAP10Q9P2Z0 257 aaPredicted RBP6.71□□□□□ -1.34
SF3B1-201ENST00000335508 CFL2Q9Y281 166 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 PCDHB11Q9Y5F2 797 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 DHRS12A0PJE2 317 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.71□□□□□ -1.34
SF3B1-201ENST00000335508 CLOCKO15516 846 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 SEMA4FO95754 770 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 NPPAP01160 153 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 ETV4P43268 484 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms