RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 RBM18Q96H35 190 aaKnown RBP3.94□□□□□ -1.78
USH2A-201ENST00000307340 CDCA3Q99618 268 aaPredicted RBP3.94□□□□□ -1.78
USH2A-201ENST00000307340 C19orf25Q9UFG5 118 aaPredicted RBP3.94□□□□□ -1.78
USH2A-201ENST00000307340 MN1Q10571 1320 aaPredicted RBP3.94□□□□□ -1.78
USH2A-201ENST00000307340 FOXD2O60548 495 aaPredicted RBP3.94□□□□□ -1.78
USH2A-201ENST00000307340 SPAM1P38567 509 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 USP46P62068 366 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 S100A12P80511 92 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 SMTNL2Q2TAL5 461 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 YOD1Q5VVQ6 348 aaPredicted RBP3.94□□□□□ -1.78
USH2A-201ENST00000307340 C17orf53Q8N3J3 647 aaPredicted RBP3.94□□□□□ -1.78
USH2A-201ENST00000307340 MARVELD2Q8N4S9 558 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 PCDH20Q8N6Y1 951 aaKnown RBP3.94□□□□□ -1.78
USH2A-201ENST00000307340 KIAA1191Q96A73 305 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 KAT8Q9H7Z6 458 aaKnown RBP3.94□□□□□ -1.78
USH2A-201ENST00000307340 SLC17A6Q9P2U8 582 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 FBXW11Q9UKB1 542 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 DRD2P14416 443 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 CSF2RAP15509 400 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 SRPXP78539 464 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 CBX2Q14781 532 aaPredicted RBP3.94□□□□□ -1.78
USH2A-201ENST00000307340 TMEM31Q5JXX7 168 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 KIAA0907Q7Z7F0 614 aaPredicted RBP3.94□□□□□ -1.78
USH2A-201ENST00000307340 KBTBD6Q86V97 674 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 OR2AG1Q9H205 316 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 OR51E2Q9H255 320 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 POMKQ9H5K3 350 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 ZNF696Q9H7X3 374 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 PHPT1Q9NRX4 125 aaPredicted RBP3.94□□□□□ -1.78
USH2A-201ENST00000307340 TRIM64CA6NLI5 447 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 RARAP10276 462 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 MRPL49Q13405 166 aaKnown RBP3.94□□□□□ -1.78
USH2A-201ENST00000307340 OTUD1Q5VV17 481 aaPredicted RBP3.94□□□□□ -1.78
USH2A-201ENST00000307340 RIPOR1Q6ZS17 1223 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 OR5T2Q8NGG2 359 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 SUSD6Q92537 303 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 KIAA1143Q96AT1 154 aaPredicted RBP3.94□□□□□ -1.78
USH2A-201ENST00000307340 PPCDCQ96CD2 204 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 RADILQ96JH8 1075 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 ATXN3LQ9H3M9 355 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 ANKRD19PQ9H560 264 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 ERVK-5Q9HDB9 667 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 DNAJC11Q9NVH1 559 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 LYARQ9NX58 379 aaKnown RBP3.94□□□□□ -1.78
USH2A-201ENST00000307340 A0A0J9YVX5 310 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 PRAMEF22A3QJZ6 481 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 EFCAB7A8K855 629 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 LRCH4O75427 683 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 RECQL4O94761 1208 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 ELFN1P0C7U0 828 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 INSRRP14616 1297 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 GPR143P51810 404 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 GPR50Q13585 617 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 HSDL1Q3SXM5 330 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 GALNTL6Q49A17 601 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 NECAB2Q7Z6G3 386 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 SERPINA11Q86U17 422 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 OR56A1Q8NGH5 318 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 SLC35B2Q8TB61 432 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 GBA2Q9HCG7 927 aaPredicted RBP3.94□□□□□ -1.78
USH2A-201ENST00000307340 HCN2Q9UL51 889 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 R3HDM2Q9Y2K5 976 aaKnown RBP3.94□□□□□ -1.78
USH2A-201ENST00000307340 INSIG1O15503 277 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 PDPK1O15530 556 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 RNASEH2AO75792 299 aaKnown RBP3.94□□□□□ -1.78
USH2A-201ENST00000307340 IGFBP5P24593 272 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 RPA3P35244 121 aaPredicted RBP3.94□□□□□ -1.78
USH2A-201ENST00000307340 RPP30P78346 268 aaKnown RBP3.94□□□□□ -1.78
USH2A-201ENST00000307340 RPL6Q02878 288 aaKnown RBP3.94□□□□□ -1.78
USH2A-201ENST00000307340 MAB21L1Q13394 359 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 SSX1Q16384 188 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 UBAP2Q5T6F2 1119 aaKnown RBP3.94□□□□□ -1.78
USH2A-201ENST00000307340 DNAJB14Q8TBM8 379 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 DNAJC1Q96KC8 554 aaKnown RBP3.94□□□□□ -1.78
USH2A-201ENST00000307340 DMAC2Q9NW81 257 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 MAP10Q9P2G4 905 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 CYB5BO43169 146 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 ABCB7O75027 752 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 FAM153BP0C7A2 387 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 MTF1Q14872 753 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 SUZ12Q15022 739 aaKnown RBP3.94□□□□□ -1.78
USH2A-201ENST00000307340 RNF135Q8IUD6 432 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 HIST2H2ABQ8IUE6 130 aaPredicted RBP3.94□□□□□ -1.78
USH2A-201ENST00000307340 WDSUB1Q8N9V3 476 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 HIPK4Q8NE63 616 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 IFT27Q9BW83 186 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 REXO4Q9GZR2 422 aaKnown RBP3.94□□□□□ -1.78
USH2A-201ENST00000307340 KATNBL1Q9H079 304 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 HDHD2Q9H0R4 259 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 ASB8Q9H765 288 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 CD248Q9HCU0 757 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 ABT1Q9ULW3 272 aaKnown RBP3.94□□□□□ -1.78
USH2A-201ENST00000307340 OAS3Q9Y6K5 1087 aaKnown RBP3.94□□□□□ -1.78
USH2A-201ENST00000307340 WASH4PA8MWX3 477 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 DNM1LO00429 736 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 NR5A2O00482 541 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 NFICP08651 508 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 SRP54P61011 504 aaKnown RBP3.94□□□□□ -1.78
USH2A-201ENST00000307340 CRYZQ08257 329 aaKnown RBP3.94□□□□□ -1.78
USH2A-201ENST00000307340 POU6F1Q14863 301 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms