RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 TCF25Q9BQ70 676 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 SLC12A9Q9BXP2 914 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 CRISPLD2Q9H0B8 497 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 NTN4Q9HB63 628 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 PARVBQ9HBI1 364 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 ETAA1Q9NY74 926 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 MAGED1Q9Y5V3 778 aaPredicted RBP19.59■□□□□ 0.73
VPS53-201ENST00000291074 HCFC2Q9Y5Z7 792 aa19.59■□□□□ 0.73
VPS53-201ENST00000291074 ZBBXA8MT70 800 aa19.58■□□□□ 0.73
VPS53-201ENST00000291074 PRAMEF4O60810 478 aa19.58■□□□□ 0.73
VPS53-201ENST00000291074 KRT6AP02538 564 aa19.58■□□□□ 0.73
VPS53-201ENST00000291074 KRT6BP04259 564 aa19.58■□□□□ 0.73
VPS53-201ENST00000291074 ATP1B2P14415 290 aaPredicted RBP19.58■□□□□ 0.73
VPS53-201ENST00000291074 KRT6CP48668 564 aa19.58■□□□□ 0.73
VPS53-201ENST00000291074 PHC1P78364 1004 aa19.58■□□□□ 0.73
VPS53-201ENST00000291074 PRAMEF9Q5VWM5 478 aa19.58■□□□□ 0.73
VPS53-201ENST00000291074 TTC33Q6PID6 262 aaPredicted RBP19.58■□□□□ 0.73
VPS53-201ENST00000291074 ENPP6Q6UWR7 440 aa19.58■□□□□ 0.73
VPS53-201ENST00000291074 FBXO30Q8TB52 745 aa19.58■□□□□ 0.73
VPS53-201ENST00000291074 ASB11Q8WXH4 323 aa19.58■□□□□ 0.73
VPS53-201ENST00000291074 AURKBQ96GD4 344 aaPredicted RBP19.58■□□□□ 0.73
VPS53-201ENST00000291074 ZNF641Q96N77 438 aaPredicted RBP19.58■□□□□ 0.73
VPS53-201ENST00000291074 SLC29A3Q9BZD2 475 aa19.58■□□□□ 0.73
VPS53-201ENST00000291074 ATG10Q9H0Y0 220 aa19.58■□□□□ 0.73
VPS53-201ENST00000291074 SMPD3Q9NY59 655 aaPredicted RBP19.58■□□□□ 0.73
VPS53-201ENST00000291074 CEPT1Q9Y6K0 416 aa19.58■□□□□ 0.73
VPS53-201ENST00000291074 NOTCH4Q99466 2003 aa19.58■□□□□ 0.72
VPS53-201ENST00000291074 MOSPD3O75425 235 aa19.58■□□□□ 0.72
VPS53-201ENST00000291074 TIMP1P01033 207 aa19.58■□□□□ 0.72
VPS53-201ENST00000291074 TACR1P25103 407 aa19.58■□□□□ 0.72
VPS53-201ENST00000291074 GBX1Q14549 363 aa19.58■□□□□ 0.72
VPS53-201ENST00000291074 NKG7Q16617 165 aa19.58■□□□□ 0.72
VPS53-201ENST00000291074 PLPP4Q5VZY2 271 aa19.58■□□□□ 0.72
VPS53-201ENST00000291074 RNF165Q6ZSG1 346 aa19.58■□□□□ 0.72
VPS53-201ENST00000291074 Q6ZVL8 140 aa19.58■□□□□ 0.72
VPS53-201ENST00000291074 ZNF548Q8NEK5 533 aaPredicted RBP19.58■□□□□ 0.72
VPS53-201ENST00000291074 TSSK3Q96PN8 268 aa19.58■□□□□ 0.72
VPS53-201ENST00000291074 PTTG2Q9NZH5 202 aa19.58■□□□□ 0.72
VPS53-201ENST00000291074 UTS2RQ9UKP6 389 aa19.58■□□□□ 0.72
VPS53-201ENST00000291074 SLC22A14Q9Y267 594 aa19.58■□□□□ 0.72
VPS53-201ENST00000291074 FADS3Q9Y5Q0 445 aa19.58■□□□□ 0.72
VPS53-201ENST00000291074 MTCL1Q9Y4B5 1905 aaKnown RBP19.57■□□□□ 0.72
VPS53-201ENST00000291074 CLOCKO15516 846 aa19.57■□□□□ 0.72
VPS53-201ENST00000291074 CYBRD1Q53TN4 286 aa19.57■□□□□ 0.72
VPS53-201ENST00000291074 LY6G5CQ5SRR4 150 aa19.57■□□□□ 0.72
VPS53-201ENST00000291074 METTL2BQ6P1Q9 378 aaKnown RBP19.57■□□□□ 0.72
VPS53-201ENST00000291074 ANKRD46Q86W74 232 aa19.57■□□□□ 0.72
VPS53-201ENST00000291074 C10orf111Q8N326 155 aa19.57■□□□□ 0.72
VPS53-201ENST00000291074 IRF7Q92985 503 aa19.57■□□□□ 0.72
VPS53-201ENST00000291074 CEP44Q9C0F1 390 aa19.57■□□□□ 0.72
VPS53-201ENST00000291074 ELOVL6Q9H5J4 265 aa19.57■□□□□ 0.72
VPS53-201ENST00000291074 KCNE1BA0A087WTH5 132 aa19.57■□□□□ 0.72
VPS53-201ENST00000291074 UPK1AO00322 258 aa19.57■□□□□ 0.72
VPS53-201ENST00000291074 NUAK1O60285 661 aa19.57■□□□□ 0.72
VPS53-201ENST00000291074 PCSK6P29122 969 aa19.57■□□□□ 0.72
VPS53-201ENST00000291074 WEE1P30291 646 aa19.57■□□□□ 0.72
VPS53-201ENST00000291074 ETV3P41162 512 aa19.57■□□□□ 0.72
VPS53-201ENST00000291074 RPS14P62263 151 aaKnown RBP19.57■□□□□ 0.72
VPS53-201ENST00000291074 B3GNT6Q6ZMB0 384 aa19.57■□□□□ 0.72
VPS53-201ENST00000291074 GPR65Q8IYL9 337 aa19.57■□□□□ 0.72
VPS53-201ENST00000291074 CIDEBQ9UHD4 219 aa19.57■□□□□ 0.72
VPS53-201ENST00000291074 SLC8A2Q9UPR5 921 aa19.57■□□□□ 0.72
VPS53-201ENST00000291074 TMEM202A6NGA9 273 aa19.56■□□□□ 0.72
VPS53-201ENST00000291074 OR2AG2A6NM03 316 aa19.56■□□□□ 0.72
VPS53-201ENST00000291074 TTC34A8MYJ7 566 aa19.56■□□□□ 0.72
VPS53-201ENST00000291074 GSTA4O15217 222 aa19.56■□□□□ 0.72
VPS53-201ENST00000291074 IL6P05231 212 aa19.56■□□□□ 0.72
VPS53-201ENST00000291074 GSNP06396 782 aa19.56■□□□□ 0.72
VPS53-201ENST00000291074 HIST1H2AGP0C0S8 130 aaPredicted RBP19.56■□□□□ 0.72
VPS53-201ENST00000291074 TCF3P15923 654 aa19.56■□□□□ 0.72
VPS53-201ENST00000291074 HIST1H2ADP20671 130 aa19.56■□□□□ 0.72
VPS53-201ENST00000291074 SLC6A12P48065 614 aa19.56■□□□□ 0.72
VPS53-201ENST00000291074 ALDH3B2P48448 385 aa19.56■□□□□ 0.72
VPS53-201ENST00000291074 NTHL1P78549 312 aa19.56■□□□□ 0.72
VPS53-201ENST00000291074 ADRM1Q16186 407 aa19.56■□□□□ 0.72
VPS53-201ENST00000291074 SMU1Q2TAY7 513 aa19.56■□□□□ 0.72
VPS53-201ENST00000291074 LRRC70Q7Z2Q7 622 aa19.56■□□□□ 0.72
VPS53-201ENST00000291074 GLB1L3Q8NCI6 653 aaPredicted RBP19.56■□□□□ 0.72
VPS53-201ENST00000291074 HIST1H2AHQ96KK5 128 aa19.56■□□□□ 0.72
VPS53-201ENST00000291074 HIST1H2AJQ99878 128 aa19.56■□□□□ 0.72
VPS53-201ENST00000291074 H2AFJQ9BTM1 129 aa19.56■□□□□ 0.72
VPS53-201ENST00000291074 ASIC5Q9NY37 505 aa19.56■□□□□ 0.72
VPS53-201ENST00000291074 PKD2L2Q9NZM6 624 aa19.56■□□□□ 0.72
VPS53-201ENST00000291074 KLHL42Q9P2K6 505 aa19.56■□□□□ 0.72
VPS53-201ENST00000291074 ZNF639Q9UID6 485 aa19.56■□□□□ 0.72
VPS53-201ENST00000291074 WNT6Q9Y6F9 365 aa19.56■□□□□ 0.72
VPS53-201ENST00000291074 C5orf42Q9H799 3197 aa19.56■□□□□ 0.72
VPS53-201ENST00000291074 ANKRD33BA6NCL7 494 aa19.56■□□□□ 0.72
VPS53-201ENST00000291074 LEFTY1O75610 366 aa19.56■□□□□ 0.72
VPS53-201ENST00000291074 LRATO95237 230 aa19.56■□□□□ 0.72
VPS53-201ENST00000291074 C8GP07360 202 aa19.56■□□□□ 0.72
VPS53-201ENST00000291074 CDH2P19022 906 aaPredicted RBP19.56■□□□□ 0.72
VPS53-201ENST00000291074 ZIK1Q3SY52 487 aaPredicted RBP19.56■□□□□ 0.72
VPS53-201ENST00000291074 GCNT7Q6ZNI0 430 aa19.56■□□□□ 0.72
VPS53-201ENST00000291074 DHRSXQ8N5I4 330 aa19.56■□□□□ 0.72
VPS53-201ENST00000291074 ZNF366Q8N895 744 aa19.56■□□□□ 0.72
VPS53-201ENST00000291074 HM13Q8TCT9 377 aa19.56■□□□□ 0.72
VPS53-201ENST00000291074 ELMO1Q92556 727 aa19.56■□□□□ 0.72
VPS53-201ENST00000291074 FOXJ1Q92949 421 aa19.56■□□□□ 0.72
VPS53-201ENST00000291074 GFM2Q969S9 779 aaKnown RBP19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms