RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 SDCCAG3Q96C92 435 aa10.12□□□□□ -0.79
UPF3B-201ENST00000276201 TUBGCP3Q96CW5 907 aa10.12□□□□□ -0.79
UPF3B-201ENST00000276201 TKTL2Q9H0I9 626 aa10.12□□□□□ -0.79
UPF3B-201ENST00000276201 TOR3AQ9H497 397 aa10.12□□□□□ -0.79
UPF3B-201ENST00000276201 MAGIXQ9H6Y5 334 aa10.12□□□□□ -0.79
UPF3B-201ENST00000276201 CATSPERBQ9H7T0 1116 aa10.12□□□□□ -0.79
UPF3B-201ENST00000276201 SCUBE2Q9NQ36 999 aa10.12□□□□□ -0.79
UPF3B-201ENST00000276201 HEBP1Q9NRV9 189 aa10.12□□□□□ -0.79
UPF3B-201ENST00000276201 SMPD4Q9NXE4 827 aa10.12□□□□□ -0.79
UPF3B-201ENST00000276201 COX16Q9P0S2 106 aa10.12□□□□□ -0.79
UPF3B-201ENST00000276201 CCL26Q9Y258 94 aa10.12□□□□□ -0.79
UPF3B-201ENST00000276201 DOCK4Q8N1I0 1966 aa10.12□□□□□ -0.79
UPF3B-201ENST00000276201 KERAO60938 352 aa10.12□□□□□ -0.79
UPF3B-201ENST00000276201 HLA-DQB2P05538 268 aa10.12□□□□□ -0.79
UPF3B-201ENST00000276201 UROSP10746 265 aa10.12□□□□□ -0.79
UPF3B-201ENST00000276201 OGNP20774 298 aaKnown RBP10.12□□□□□ -0.79
UPF3B-201ENST00000276201 PGFP49763 221 aa10.12□□□□□ -0.79
UPF3B-201ENST00000276201 ISL1P61371 349 aa10.12□□□□□ -0.79
UPF3B-201ENST00000276201 PHC1P78364 1004 aa10.12□□□□□ -0.79
UPF3B-201ENST00000276201 ECT2LQ008S8 904 aa10.12□□□□□ -0.79
UPF3B-201ENST00000276201 MVKQ03426 396 aa10.12□□□□□ -0.79
UPF3B-201ENST00000276201 PYCR3Q53H96 274 aa10.12□□□□□ -0.79
UPF3B-201ENST00000276201 RABL3Q5HYI8 236 aa10.12□□□□□ -0.79
UPF3B-201ENST00000276201 PAGE3Q5JUK9 113 aa10.12□□□□□ -0.79
UPF3B-201ENST00000276201 IER5LQ5T953 404 aa10.12□□□□□ -0.79
UPF3B-201ENST00000276201 LAIR2Q6ISS4 152 aa10.12□□□□□ -0.79
UPF3B-201ENST00000276201 TXNDC11Q6PKC3 985 aa10.12□□□□□ -0.79
UPF3B-201ENST00000276201 PRR23CQ6ZRP0 262 aa10.12□□□□□ -0.79
UPF3B-201ENST00000276201 ZDHHC13Q8IUH4 622 aa10.12□□□□□ -0.79
UPF3B-201ENST00000276201 KIAA1958Q8N8K9 716 aa10.12□□□□□ -0.79
UPF3B-201ENST00000276201 ARL14EPQ8N8R7 260 aaPredicted RBP10.12□□□□□ -0.79
UPF3B-201ENST00000276201 DYNC2LI1Q8TCX1 351 aa10.12□□□□□ -0.79
UPF3B-201ENST00000276201 OVCA2Q8WZ82 227 aa10.12□□□□□ -0.79
UPF3B-201ENST00000276201 KIAA1191Q96A73 305 aa10.12□□□□□ -0.79
UPF3B-201ENST00000276201 IMP4Q96G21 291 aaKnown RBP10.12□□□□□ -0.79
UPF3B-201ENST00000276201 REXO5Q96IC2 774 aaKnown RBP10.12□□□□□ -0.79
UPF3B-201ENST00000276201 NODALQ96S42 347 aa10.12□□□□□ -0.79
UPF3B-201ENST00000276201 FSD1LQ9BXM9 530 aa10.12□□□□□ -0.79
UPF3B-201ENST00000276201 TRIT1Q9H3H1 467 aaKnown RBP10.12□□□□□ -0.79
UPF3B-201ENST00000276201 SOX17Q9H6I2 414 aaPredicted RBP10.12□□□□□ -0.79
UPF3B-201ENST00000276201 OBP2AQ9NY56 170 aa10.12□□□□□ -0.79
UPF3B-201ENST00000276201 PCDHGA8Q9Y5G5 932 aa10.12□□□□□ -0.79
UPF3B-201ENST00000276201 MYO16Q9Y6X6 1858 aa10.12□□□□□ -0.79
UPF3B-201ENST00000276201 TRAV19A0A0A6YYK7 116 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 SAGE2PA6NJ88 616 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 TAF4O00268 1085 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 SLC1A7O00341 560 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 KCNH1O95259 989 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 PDGFBP01127 241 aaPredicted RBP10.11□□□□□ -0.79
UPF3B-201ENST00000276201 PPP3CCP48454 512 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 PPP5CP53041 499 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 WNT3AP56704 352 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 OR4D2P58180 307 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 TIAL1Q01085 375 aaKnown RBP eCLIP10.11□□□□□ -0.79
UPF3B-201ENST00000276201 IFITM3Q01628 133 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 CLCQ05315 142 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 SELENBP1Q13228 472 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 PLA2G4EQ3MJ16 856 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 SYT6Q5T7P8 510 aaPredicted RBP10.11□□□□□ -0.79
UPF3B-201ENST00000276201 SULT1C3Q6IMI6 304 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 DLEU7Q6UYE1 221 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 SLCO6A1Q86UG4 719 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 HOMEZQ8IX15 550 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 PDZD8Q8NEN9 1154 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 OR5K1Q8NHB7 308 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 FAR1Q8WVX9 515 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 ZNF419Q96HQ0 510 aaPredicted RBP10.11□□□□□ -0.79
UPF3B-201ENST00000276201 RNF145Q96MT1 663 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 ZNF300Q96RE9 604 aaPredicted RBP10.11□□□□□ -0.79
UPF3B-201ENST00000276201 LRFN3Q9BTN0 628 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 TRMT61BQ9BVS5 477 aaKnown RBP10.11□□□□□ -0.79
UPF3B-201ENST00000276201 BTBD2Q9BX70 525 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 DERL2Q9GZP9 239 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 FBXO44Q9H4M3 255 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 FBXL21Q9UKT6 434 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 KIF26AQ9ULI4 1882 aaPredicted RBP10.11□□□□□ -0.79
UPF3B-201ENST00000276201 COL4A2P08572 1712 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 PRR33A8MZF0 331 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 FAM47E-STBD1D6RA91 191 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 G3V2T6 193 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 B4GAT1O43505 415 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 NUAK1O60285 661 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 FKBP9O95302 570 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 MLYCDO95822 493 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 USP17L7P0C7H9 530 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 ZDHHC11BP0C7U3 371 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 NCK1P16333 377 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 CHRM3P20309 590 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 CD9P21926 228 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 YBX1P67809 324 aaKnown RBP10.11□□□□□ -0.79
UPF3B-201ENST00000276201 CD47Q08722 323 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 FCHO2Q0JRZ9 810 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 POLD3Q15054 466 aaPredicted RBP10.11□□□□□ -0.79
UPF3B-201ENST00000276201 SMU1Q2TAY7 513 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 CTU2Q2VPK5 515 aaKnown RBP10.11□□□□□ -0.79
UPF3B-201ENST00000276201 INAVAQ3KP66 663 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 ANKS6Q68DC2 871 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 ARMC8Q8IUR7 673 aa10.11□□□□□ -0.79
UPF3B-201ENST00000276201 CELF5Q8N6W0 485 aaKnown RBP10.11□□□□□ -0.79
UPF3B-201ENST00000276201 OR7A2PQ8NGA2 310 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms